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Query: NC_016582:5393568:5414935 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 5414935, End: 5415564, Length: 630

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013595:3388000:340156134015613402160600Streptosporangium roseum DSM 43021, complete genomeprotein of unknown function ATP binding protein2e-49195
NC_009921:465683:469585469585470178594Frankia sp. EAN1pec, complete genomeprotein of unknown function ATP binding4e-49194
NC_014210:2597000:263360926336092634184576Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,protein of unknown function ATP binding protein2e-47189
NC_018524:4848154:485194548519454852547603Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeconserved hypothetical ATP binding family protein1e-46186
NC_015957:115133:120442120442121086645Streptomyces violaceusniger Tu 4113 chromosome, complete genomeATP-binding protein4e-44177
NC_016582:8711199:8736738873673887377961059Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative ATP/GTP-binding protein1e-39162
NC_016109:4199839:420590042059004206511612Kitasatospora setae KM-6054, complete genomeputative ATP/GTP-binding protein1e-38159
NC_015957:9801884:981353598135359814125591Streptomyces violaceusniger Tu 4113 chromosome, complete genomeATP-binding protein1e-38159
NC_016114:7116141:712078571207857121375591Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein2e-35148
NC_013929:3600343:364084236408423641468627Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-32138
NC_013894:464907:468237468237468785549Thermocrinis albus DSM 14484 chromosome, complete genomesmall GTP-binding protein1e-21102
NC_017505:497603:501788501788502324537Neisseria meningitidis alpha710 chromosome, complete genomehypothetical protein2e-1789
NC_003112:498465:499574499574500110537Neisseria meningitidis MC58, complete genomehypothetical protein2e-1789
NC_007484:130896:144630144630145175546Nitrosococcus oceani ATCC 19707, complete genomeConserved hypothetical ATP binding protein1e-1583.2
NC_014315:114151:129363129363129908546Nitrosococcus watsoni C-113 chromosome, complete genomehypothetical protein2e-1582
NC_013521:107937:120268120268120843576Sanguibacter keddieii DSM 10542, complete genomesmall GTP-binding protein domain protein2e-1375.5
NC_013716:4306695:437688743768874377447561Citrobacter rodentium ICC168, complete genomeputative ATP binding protein2e-1168.9
NC_014391:4644500:464667846466784647307630Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein2e-1065.5
NC_013156:154233:163191163191163652462Methanocaldococcus fervens AG86, complete genomesmall GTP-binding protein1e-0653.1
NC_013887:189400:210173210173210646474Methanocaldococcus sp. FS406-22 chromosome, complete genomesmall GTP-binding protein5e-0651.2