Pre_GI: BLASTP Hits

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Query: NC_016582:1:9784 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9784, End: 9888, Length: 105

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016113:994469:100214910021491002919771Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencetransposase1e-0858.9
NC_016111:4003290:400930240093024010063762Streptomyces cattleya NRRL 8057, complete genometransposase1e-0858.5
NC_016111:2402891:241448224144822415243762Streptomyces cattleya NRRL 8057, complete genometransposase1e-0858.5
NC_016111:2651500:266767926676792668440762Streptomyces cattleya NRRL 8057, complete genometransposase1e-0858.5
NC_016111:4003290:401832840183284019089762Streptomyces cattleya NRRL 8057, complete genometransposase1e-0858.5
NC_016111:4588021:460033546003354601096762Streptomyces cattleya NRRL 8057, complete genometransposase1e-0858.5
NC_016111:5369414:537976253797625380523762Streptomyces cattleya NRRL 8057, complete genometransposase1e-0858.5
NC_015953:6212366:622146062214606221582123Streptomyces sp. SirexAA-E chromosome, complete genome5e-0856.6
NC_003888:3893187:39045323904532390462493Streptomyces coelicolor A3(2), complete genome1e-0651.6
NC_015953:46732:782357823578423189Streptomyces sp. SirexAA-E chromosome, complete genome2e-0651.2