Pre_GI: BLASTP Hits

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Query: NC_012917:2921932:2921932 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2921932, End: 2922519, Length: 588

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004547:1970686:199268619926861993273588Erwinia carotovora subsp. atroseptica SCRI1043, complete genometranscriptional regulator BetI2e-103374
NC_020211:1621000:163383016338301634417588Serratia marcescens WW4, complete genomeDNA-binding transcriptional repressor2e-80298
NC_014500:3023762:302946130294613030075615Dickeya dadantii 3937 chromosome, complete genomeDNA-binding transcriptional regulatory protein BetI4e-77287
NC_020260:1993344:201212620121262012734609Cronobacter sakazakii Sp291, complete genometranscriptional regulator BetI1e-65249
NC_020063:3690308:369030836903083690895588Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator, TetR family4e-64244
NC_011415:351810:368816368816369403588Escherichia coli SE11 chromosome, complete genometranscriptional regulator BetI8e-64243
NC_007946:289425:354713354713355318606Escherichia coli UTI89, complete genomeregulatory protein BetI5e-64243
NC_008563:318993:356305356305356901597Escherichia coli APEC O1, complete genomeregulatory protein BetI5e-64243
NC_008253:334467:411406411406412011606Escherichia coli 536, complete genomeTetR-family regulatory protein1e-63242
NC_004431:364000:419239419239419844606Escherichia coli CFT073, complete genometranscriptional regulator BetI2e-63241
NC_014532:988351:994348994348994980633Halomonas elongata DSM 2581, complete genometranscriptional regulator BetI3e-58224
NC_017387:1110412:112071311207131121306594Acinetobacter baumannii TCDC-AB0715 chromosome, complete genometranscriptional regulator BetI2e-43175
NC_007645:829500:846356846356846952597Hahella chejuensis KCTC 2396, complete genomeTranscriptional regulator2e-42171
NC_015733:3595882:359744735974473598091645Pseudomonas putida S16 chromosome, complete genomeTetR family transcriptional regulator2e-1272
NC_019897:1577015:160920016092001609808609Thermobacillus composti KWC4 chromosome, complete genomehypothetical protein4e-0961.2
NC_014976:627935:639581639581640174594Bacillus subtilis BSn5 chromosome, complete genomeTetR family transcriptional regulator5e-0857.4
NC_016584:3040887:304528830452883045887600Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator5e-0754.3
NC_018681:2985078:299914729991472999767621Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein6e-0753.9
NC_014364:394899:399697399697400305609Spirochaeta smaragdinae DSM 11293 chromosome, complete genometranscriptional regulator, TetR family3e-0651.6
NC_014666:8016066:802999880299988030690693Frankia sp. EuI1c chromosome, complete genometranscriptional regulator, TetR family4e-0651.6