Some Help

Query: NC_011991:65368 Agrobacterium vitis S4 plasmid pAtS4b, complete sequence

Start: 65368, End: 91971, Length: 26604

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002678:50606705060670511283352164Mesorhizobium loti MAFF303099, complete genome01114BLASTN svgBLASTP svg
NC_007762:889798897911484025862Rhizobium etli CFN 42 plasmid p42a, complete sequence3e-65258BLASTN svgBLASTP svg
NC_007494:27084*270844533018247Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence1e-64256BLASTN svgBLASTP svg
NC_012811:22754122754127111643576Methylobacterium extorquens AM1 megaplasmid, complete sequence1e-20109BLASTN svgBLASTP svg
NC_012808:38977513897751392263924889Methylobacterium extorquens AM1, complete genome1e-20109BLASTN svgBLASTP svg
NC_013856:18976818976820782418057Azospirillum sp. B510 plasmid pAB510b, complete sequence6e-20107BLASTN svgBLASTP svg
NC_011987:53760537608309929340Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence9e-1693.7BLASTN svgBLASTP svg
NC_020908:45504144550414457459924186Octadecabacter arcticus 238, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_014006:2999500*2999500304199842499Sphingobium japonicum UT26S chromosome 1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012586:89714889714892110623959Rhizobium sp. NGR234 plasmid pNGR234b, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_007493:546000*54600056875722758Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence5e-0867.9BLASTN svgBLASTP svg
NC_010172:4064087*4064087410309939013Methylobacterium extorquens PA1, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_012724:20685882068588209611727530Burkholderia glumae BGR1 chromosome 1, complete genome3e-0661.9BLASTN svgBLASTP svg