Pre_GI: BLASTN Hits

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Query: NC_011989:2549252 Agrobacterium vitis S4 chromosome 1, complete sequence

Start: 2549252, End: 2570099, Length: 20848

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010498:22783062278306230147623171Escherichia coli SMS-3-5, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_021066:46029246029251915858867Raoultella ornithinolytica B6, complete genome2e-0661.9BLASTN svgBLASTP svg