Pre_GI: BLASTP Hits

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Query: NC_011147:792489:801534 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 801534, End: 801632, Length: 99

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:792543:80158880158880168699Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-1167.4
NC_004631:799810:80888080888080897899Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein8e-1165.9
NC_003198:2179688:21949582194958219505699Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein8e-1165.9