Pre_GI: BLASTP Hits

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Query: NC_011080:333121:343087 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 343087, End: 343554, Length: 468

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011294:311796:318800318800319267468Salmonella enterica subsp. enterica serovar Enteritidis strexported pathogenicity island protein1e-71268
NC_006905:326517:333900333900334367468Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein4e-71266
NC_011205:329155:342886342886343353468Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein9e-71265
NC_012125:326909:333806333806334237432Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-70263
NC_011149:309556:320628320628321095468Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein5e-70262
NC_011274:311843:337603337603338001399Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91exported pathogenicity island protein1e-56218