Pre_GI: BLASTP Hits

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Query: NC_010658:1090104:1104479 Shigella boydii CDC 3083-94, complete genome

Start: 1104479, End: 1105564, Length: 1086

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014171:261952:2956082956082966841077Bacillus thuringiensis BMB171 chromosome, complete genomeglycosyltransferase2e-87323
NC_020291:4944835:4963699496369949648051107Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomelipopolysaccharide biosynthesis protein1e-82306
NC_013714:2294342:2309254230925423103031050Bifidobacterium dentium Bd1, complete genomePutative glycosyltransferase2e-76286
NC_018515:4334240:4334240433424043353851146Desulfosporosinus meridiei DSM 13257 chromosome, complete genomehypothetical protein1e-69263
NC_015422:4395388:4400492440049244055015010Alicycliphilus denitrificans K601 chromosome, complete genomefamily 2 glycosyl transferase1e-68260
NC_014910:4026613:4032224403222440372335010Alicycliphilus denitrificans BC chromosome, complete genomeglycosyl transferase family 23e-68259
NC_014973:1136794:1150235115023511552985064Geobacter sp. M18 chromosome, complete genomegroup 1 glycosyl transferase2e-66253
NC_012691:2225000:2233127223312722342391113Tolumonas auensis DSM 9187, complete genomepolysaccharide biosynthesis protein2e-65249
NC_009256:3540531:3556562355656235602573696Burkholderia vietnamiensis G4 chromosome 1, complete sequencelipopolysaccharide biosynthesis protein-like protein3e-65249
NC_015500:533528:5406235406235417531131Treponema brennaborense DSM 12168 chromosome, complete genomehypothetical protein3e-64245
NC_010814:3621215:3636344363634436388752532Geobacter lovleyi SZ, complete genomeRadical SAM domain protein6e-63241
NC_014655:1835848:1846549184654918476911143Leadbetterella byssophila DSM 17132 chromosome, complete genomepolysaccharide biosynthesis protein2e-62239
NC_009483:2640403:2713130271313027142361107Geobacter uraniireducens Rf4 chromosome, complete genomelipopolysaccharide biosynthesis protein-like protein2e-62239
NC_009379:304222:3125753125753158233249Polynucleobacter sp. QLW-P1DMWA-1, complete genomeMethyltransferase type 116e-62238
NC_015572:1252000:1286871128687112879351065Methylomonas methanica MC09 chromosome, complete genomelipopolysaccharide biosynthesis protein-like protein7e-62238
NC_014733:107394:1175431175431186821140Methylovorus sp. MP688 chromosome, complete genomepolysaccharide biosynthesis protein1e-61237
NC_017267:3982619:4002590400259040039031314Xanthomonas oryzae pv. oryzicola BLS256 chromosome, completeputative glycosyltransferase2e-61236
NC_016629:4081500:4081677408167740853903714Desulfovibrio africanus str. Walvis Bay chromosome, completefamily 2 glycosyl transferase1e-60234
NC_006677:215466:2181472181472219293783Gluconobacter oxydans 621H, complete genomehypothetical protein9e-61234
NC_014394:3036758:3050413305041330515071095Gallionella capsiferriformans ES-2 chromosome, complete genomelipopolysaccharide biosynthesis protein-like protein5e-61234
NC_008347:2677000:2691562269156226942102649Maricaulis maris MCS10, complete genomeglycosyl transferase, family 27e-60231
NC_008609:2254392:2264445226444522655361092Pelobacter propionicus DSM 2379, complete genomepolysaccharide biosynthesis protein7e-60231
NC_013173:133466:1581021581021613353234Desulfomicrobium baculatum DSM 4028, complete genomeglycosyl transferase family 22e-59229
NC_014100:449541:4495414495414519972457Caulobacter segnis ATCC 21756 chromosome, complete genomerhamnan synthesis protein F1e-58227
NC_011894:6418000:6423450642345064258132364Methylobacterium nodulans ORS 2060, complete genomeglycosyl transferase group 11e-58226
NC_002939:1634843:1653235165323516543801146Geobacter sulfurreducens PCA, complete genomehypothetical protein3e-58225
NC_005773:1135374:1155816115581611596043789Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein8e-58224
NC_013173:2884887:2910644291064429117381095Desulfomicrobium baculatum DSM 4028, complete genomelipopolysaccharide biosynthesis protein-like protein2e-57223
NC_015059:76000:7776977769789141146Acidobacterium sp. MP5ACTX9 plasmid pACIX904, complete sequencelipopolysaccharide biosynthesis protein-like protein2e-57223
NC_014825:165701:1834481834481845301083Ruminococcus albus 7 plasmid pRUMAL02, complete sequenceglycosyltransferase3e-55216
NC_014973:1136794:1155322115532211574482127Geobacter sp. M18 chromosome, complete genomegroup 1 glycosyl transferase8e-54211
NC_017208:256163:286180286180286797618Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeglycosyltransferase3e-53209
NC_009615:4425500:4437118443711844382301113Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein3e-52205
NC_002977:2719774:2740479274047927433522874Methylococcus capsulatus str. Bath, complete genomeglycosyl transferase, group 2 family protein3e-52205
NC_015500:987641:1002350100235010034501101Treponema brennaborense DSM 12168 chromosome, complete genomehypothetical protein4e-51202
NC_015164:4023881:4041210404121040423671158Bacteroides salanitronis DSM 18170 chromosome, complete genomehypothetical protein5e-51201
NC_014033:103020:1204371204371215461110Prevotella ruminicola 23 chromosome, complete genomehypothetical protein3e-50199
NC_015311:24071:3580535805369501146Prevotella denticola F0289 chromosome, complete genomehypothetical protein5e-49195
NC_020304:2237194:2253114225311422572774164Desulfocapsa sulfexigens DSM 10523, complete genomemethyltransferase, FkbM family6e-49194
NC_008343:1699132:1721908172190817247482841Granulibacter bethesdensis CGDNIH1, complete genomeglycosyltransferase4e-48192
NC_009092:1599526:1625289162528916264071119Shewanella loihica PV-4, complete genometetratricopeptide TPR_21e-42174
NC_013446:3147202:3161047316104731625191473Comamonas testosteroni CNB-2, complete genomeputative DMSO reductase2e-40166
NC_013716:2255102:2269192226919222702321041Citrobacter rodentium ICC168, complete genomehypothetical protein3e-35149
NC_017208:256163:283533283533283895363Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeglycosyltransferase1e-21103
NC_013446:3147202:3157665315766531600522388Comamonas testosteroni CNB-2, complete genomehyaluronan synthase3e-1169.7