Pre_GI: BLASTP Hits

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Query: NC_010322:1817598:1838550 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1838550, End: 1838711, Length: 162

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009436:1679265:1682380168238016836181239Enterobacter sp. 638, complete genometransposase IS116/IS110/IS902 family protein3e-0857.4
NC_016612:5231065:5253880525388052551091230Klebsiella oxytoca KCTC 1686 chromosome, complete genometransposase, IS110 family protein9e-0752.4
NC_015061:2927707:2933995293399529352331239Rahnella sp. Y9602 chromosome, complete genometransposase IS116/IS110/IS902 family protein9e-0752.4
NC_016816:4129299:4148820414882041500581239Pantoea ananatis LMG 5342, complete genometransposase, IS110 family2e-0650.8
NC_014500:3097362:3160534316053431618111278Dickeya dadantii 3937 chromosome, complete genomeISEch11 transposase3e-0650.8
NC_017047:2042346:2063312206331220645381227Rahnella aquatilis HX2 chromosome, complete genometransposase3e-0650.8
NC_016818:2836851:2866484286648428677221239Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completetransposase IS116/IS110/IS902 family3e-0650.4