Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4659131 Kineococcus radiotolerans SRS30216, complete genome

Start: 4659131, End: 4659853, Length: 723

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014318:3947845:395292039529203953564645Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator8e-1684
NC_017186:3947874:395296139529613953593633Amycolatopsis mediterranei S699 chromosome, complete genomeTetR family transcriptional regulator9e-1684
NC_010397:4387500:439112343911234391791669Mycobacterium abscessus chromosome Chromosome, complete sequencePutative TetR-family transcriptional regulator1e-0757
NC_003888:211748:229995229995230669675Streptomyces coelicolor A3(2), complete genometranscriptional regulator3e-0755.5