Query: NC_008268:4669530 Rhodococcus sp. RHA1, complete genome
Start: 4669530, End: 4695099, Length: 25570
Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
| Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
|---|
| NC_015514:3911655 | 3911655 | 3937962 | 26308 | Cellulomonas fimi ATCC 484 chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_015859:1631573 | 1631573 | 1659253 | 27681 | Corynebacterium variabile DSM 44702 chromosome, complete genome | 9e-19 | 103 | BLASTN svg | BLASTP svg |
| NC_013173:3890370* | 3890370 | 3909340 | 18971 | Desulfomicrobium baculatum DSM 4028, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
| NC_013961:3269368* | 3269368 | 3302694 | 33327 | Erwinia amylovora, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_013158:2714778* | 2714778 | 2740599 | 25822 | Halorhabdus utahensis DSM 12940, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_009648:4958500* | 4958500 | 4985698 | 27199 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
| NC_013850:4993307 | 4993307 | 5022156 | 28850 | Klebsiella variicola At-22 chromosome, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
| NC_006087:885760 | 885760 | 912599 | 26840 | Leifsonia xyli subsp. xyli str. CTCB07, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_012522:4692260 | 4692260 | 4712304 | 20045 | Rhodococcus opacus B4, complete genome | 0 | 11320 | BLASTN svg | BLASTP svg |
| NC_008268:7052202 | 7052202 | 7073099 | 20898 | Rhodococcus sp. RHA1, complete genome | 2e-62 | 248 | BLASTN svg | BLASTP svg |
| NC_009142:5647737* | 5647737 | 5674599 | 26863 | Saccharopolyspora erythraea NRRL 2338, complete genome | 4e-21 | 111 | BLASTN svg | BLASTP svg |
| NC_009142:6086000 | 6086000 | 6104826 | 18827 | Saccharopolyspora erythraea NRRL 2338, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_019673:3253650 | 3253650 | 3279249 | 25600 | Saccharothrix espanaensis DSM 44229 complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_013521:2924540 | 2924540 | 2951474 | 26935 | Sanguibacter keddieii DSM 10542, complete genome | 6e-20 | 107 | BLASTN svg | BLASTP svg |
| NC_015500:2866027* | 2866027 | 2917646 | 51620 | Treponema brennaborense DSM 12168 chromosome, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |