Pre_GI: BLASTP Hits

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Query: NC_007951:3631772:3642218 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 3642218, End: 3642877, Length: 660

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014541:2978500:299438229943822994996615Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, TetR family9e-1167
NC_008577:1489643:151097015109701511590621Shewanella sp. ANA-3 chromosome 1, complete sequencetranscriptional regulator, TetR family1e-0963.2
NC_008700:2788363:280763428076342808254621Shewanella amazonensis SB2B, complete genomeputative transcriptional regulator, TetR family5e-0754.3
NC_007954:1494291:149868114986811499301621Shewanella denitrificans OS217, complete genomeregulatory protein, TetR1e-0653.5
NC_008062:370902:372299372299372952654Burkholderia cenocepacia AU 1054 chromosome 3, complete sequencetranscriptional regulator, TetR family2e-0652.8
NC_008544:348500:350119350119350772654Burkholderia cenocepacia HI2424 chromosome 3, complete sequencetranscriptional regulator, TetR family2e-0652.8
NC_016002:2453919:247043024704302471047618Pseudogulbenkiania sp. NH8B, complete genomeTetR family transcriptional regulator2e-0652.4
NC_010170:4463000:446622944662294466879651Bordetella petrii, complete genometranscriptional regulator, TetR family2e-0652.4
NC_010512:734834:736231736231736884654Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, TetR family5e-0651.2
NC_011663:1627220:163153716315371632163627Shewanella baltica OS223 chromosome, complete genomeTetR family transcriptional regulator1e-0550.4