Pre_GI: BLASTP Hits

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Query: NC_007951:2045830:2052283 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 2052283, End: 2052654, Length: 372

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015381:2859000:2888692288869228897111020Burkholderia gladioli BSR3 chromosome 1, complete sequenceshort-chain dehydrogenase/reductase SDR4e-1270.1
NC_013037:1072266:1078720107872010797451026Dyadobacter fermentans DSM 18053, complete genomeshort-chain dehydrogenase/reductase SDR4e-1167
NC_013061:2055000:2056381205638120574001020Pedobacter heparinus DSM 2366, complete genomeshort-chain dehydrogenase/reductase SDR7e-1165.9
NC_009004:2477220:2497834249783424988531020Lactococcus lactis subsp. cremoris MG1363, complete genomehypothetical protein predicted by Glimmer/Critica5e-0856.6
NC_008463:1293079:132801213280121328974963Pseudomonas aeruginosa UCBPP-PA14, complete genomepossible dehydrogenase8e-0855.8
NC_010407:1114408:113309811330981134057960Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative oxidoreductase7e-0752.8
NC_015709:1769806:178661417866141787606993Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeshort-chain dehydrogenase/reductase SDR3e-0650.8
NC_015957:5225903:523357652335765234457882Streptomyces violaceusniger Tu 4113 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR3e-0650.4
NC_004463:1369165:136828713682871369225939Bradyrhizobium japonicum USDA 110, complete genomedehydrogenase4e-0650.1
NC_016887:4343830:434953643495364350498963Nocardia cyriacigeorgica GUH-2, complete genomeputative Short-chain dehydrogenase/reductase4e-0650.1
NC_011365:1171536:117581411758141176794981Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR6e-0649.3