Pre_GI: BLASTP Hits

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Query: NC_007613:1353500:1366423 Shigella boydii Sb227, complete genome

Start: 1366423, End: 1366743, Length: 321

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010658:1772994:177703417770341777354321Shigella boydii CDC 3083-94, complete genome2e-48190
NC_020064:871338:885342885342885851510Serratia marcescens FGI94, complete genomephage contractile tail tube protein, P2 family4e-1166.6
NC_012880:2480000:248512124851212485639519Dickeya dadantii Ech703, complete genomephage major tail tube protein1e-1065.5
NC_006155:2084669:210209821020982102613516Yersinia pseudotuberculosis IP 32953, complete genomeputative tail tube protein FII (bacteriophage P2)2e-1064.7
NC_014228:3022903:303198430319843032499516Xenorhabdus nematophila ATCC 19061, complete genomeMajor tail tube protein (Protein FII)5e-1063.2
NC_020181:5130513:517086851708685171386519Enterobacter aerogenes EA1509E, complete genomePhage major tail tube protein9e-1062.4
NC_003198:4453457:447956944795694480084516Salmonella enterica subsp. enterica serovar Typhi str. CT18,probable major tail tube protein2e-0961.2
NC_014837:3739408:375870937587093759224516Pantoea sp. At-9b chromosome, complete genomephage major tail tube protein5e-0959.7
NC_016845:4077293:407966940796694080184516Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative prophage tail tube protein7e-0959.3
NC_009648:3803622:380820338082033808718516Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage tail tube protein7e-0959.3
NC_008781:3508784:351174535117453512257513Polaromonas naphthalenivorans CJ2, complete genomephage major tail tube protein1e-0858.5
NC_016816:674171:675353675353675865513Pantoea ananatis LMG 5342, complete genomemajor tail tube protein (protein FII)7e-0855.8
NC_007963:1552761:157239515723951572907513Chromohalobacter salexigens DSM 3043, complete genomephage major tail tube protein1e-0755.1
NC_012560:3771861:379042137904213790936516Azotobacter vinelandii DJ, complete genomePhage P2 FII-like protein2e-0754.3
NC_021150:3771860:379042037904203790935516Azotobacter vinelandii CA6, complete genomePhage P2 FII-like protein2e-0754.3
NC_015563:4959843:496250749625074963016510Delftia sp. Cs1-4 chromosome, complete genomephage major tail tube protein4e-0753.5
NC_015856:1182974:118421311842131184722510Collimonas fungivorans Ter331 chromosome, complete genomephage-related tail protein6e-0753.1
NC_002978:549454:556386556386556883498Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage P2W3, contractile tail tube protein6e-0752.8
NC_012416:753500:760145760145760645501Wolbachia sp. wRi, complete genomecontractile tail tube protein1e-0652
NC_006576:856014:877551877551878054504Synechococcus elongatus PCC 6301, complete genomephage tail tube protein FII1e-0652
NC_012724:1914740:192022419202241920733510Burkholderia glumae BGR1 chromosome 1, complete genomePhage major tail tube protein1e-0651.6
NC_010981:468465:478614478614479120507Wolbachia pipientis, complete genomePhage tail tube protein2e-0651.6
NC_010981:1371265:140788714078871408390504Wolbachia pipientis, complete genomeputative phage related protein2e-0651.2
NC_012779:3016327:301974830197483020263516Edwardsiella ictaluri 93-146, complete genomephage major tail tube protein, putative2e-0651.2