Pre_GI: BLASTP Hits

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Query: NC_006511:1808815:1832013 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 1832013, End: 1832459, Length: 447

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014618:2989000:300918130091813009627447Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein3e-44176
NC_012880:3125261:314809031480903148536447Dickeya dadantii Ech703, complete genomeprotein of unknown function DUF3072e-43174
NC_003143:1630000:163225116322511632697447Yersinia pestis CO92, complete genomehypothetical protein1e-40164
NC_008149:2802392:285106228510622851508447Yersinia pestis Nepal516, complete genomemembrane protein1e-40164
NC_016812:4246542:425948542594854259970486Sinorhizobium fredii HH103, complete genomehypothetical protein2e-1374.7
NC_008319:1601494:160578816057881606198411Synechococcus sp. CC9311, complete genomehypothetical protein2e-1168.2
NC_013757:1544348:157982115798211580261441Geodermatophilus obscurus DSM 43160, complete genomeprotein of unknown function DUF3071e-0962.4
NC_019673:526000:532133532133532492360Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-0961.6
NC_013510:2288746:228874622887462289135390Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3073e-0960.5
NC_009901:2272206:229176722917672292174408Shewanella pealeana ATCC 700345, complete genomeprotein of unknown function DUF3074e-0960.5
NC_014834:959986:993177993177993602426Rhodopseudomonas palustris DX-1 chromosome, complete genomehypothetical protein9e-0959.3
NC_010572:3363830:340855434085543408946393Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein1e-0858.9
NC_014659:1006500:101073910107391011143405Rhodococcus equi 103S, complete genomeintegral membrane protein2e-0858.2
NC_011386:136223:142162142162142566405Oligotropha carboxidovorans OM5, complete genomehypothetical protein2e-0858.2
NC_015684:362236:386143386143386547405Oligotropha carboxidovorans OM5 chromosome, complete genomehypothetical protein2e-0858.2
NC_007958:830000:852742852742853146405Rhodopseudomonas palustris BisB5, complete genomeprotein of unknown function DUF3076e-0856.2
NC_011593:1830500:183458018345801834945366Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,hypothetical protein6e-0856.2
NC_017219:1830353:183431018343101834735426Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein6e-0856.2
NC_017218:1166844:117080111708011171226426Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomehypothetical protein1e-0755.5
NC_012470:1390285:139494713949471395312366Streptococcus equi subsp. zooepidemicus, complete genomemembrane protein2e-0651.6
NC_009445:467682:495463495463495852390Bradyrhizobium sp. ORS 278 chromosome, complete genomehypothetical protein2e-0651.2
NC_014550:2835696:283626828362682836678411Arthrobacter arilaitensis Re117, complete genomehypothetical protein2e-0651.2
NC_008618:1704462:171667317166731717113441Bifidobacterium adolescentis ATCC 15703, complete genomehypothetical protein4e-0650.1
NC_014387:3227875:323643432364343236808375Butyrivibrio proteoclasticus B316 chromosome 1, complete genomehypothetical protein5e-0650.1