Some Help

Query: NC_005126:3204980:3223263 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 3223263, End: 3224063, Length: 801

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013209:2414500:242436624243662425226861Acetobacter pasteurianus IFO 3283-01, complete genomeTonB periplasmic protein1e-1377.4
NC_017100:2414075:242557324255732426433861Acetobacter pasteurianus IFO 3283-03, complete genomeTonB periplasmic protein1e-1377.4
NC_017121:2413000:242291524229152423775861Acetobacter pasteurianus IFO 3283-07, complete genomeTonB periplasmic protein1e-1377.4
NC_017108:2413000:242291024229102423770861Acetobacter pasteurianus IFO 3283-12, complete genomeTonB periplasmic protein1e-1377.4
NC_017125:2415500:242555324255532426413861Acetobacter pasteurianus IFO 3283-22, complete genomeTonB periplasmic protein1e-1377.4
NC_017146:2416000:242559524255952426455861Acetobacter pasteurianus IFO 3283-26, complete genomeTonB periplasmic protein1e-1377.4
NC_017111:2413000:242292824229282423788861Acetobacter pasteurianus IFO 3283-32, complete genomeTonB periplasmic protein1e-1377.4
NC_007941:11319:219882198822764777Escherichia coli UTI89 plasmid pUTI89, complete sequenceputative periplasmic colicin Js sensitivity protein CjrB6e-22104
NC_007947:2447635:245979124597912460531741Methylobacillus flagellatus KT, complete genomeTonB-like protein2e-0652.8
NC_005773:208000:230007230007230753747Pseudomonas syringae pv. phaseolicola 1448A, complete genomeferric siderophore transporter, periplasmic energy transduction protein TonB2e-1686.3
NC_011663:4943179:494703749470374947843807Shewanella baltica OS223 chromosome, complete genomeTonB family protein5e-0962
NC_016822:2940000:294985629498562950632777Shigella sonnei 53G, complete genomeTonB-dependent colicin J protein CjrB1e-21103
NC_015594:1210736:121073612107361211497762Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeTonB family protein4e-1375.5
NC_014217:800406:802022802022802894873Starkeya novella DSM 506 chromosome, complete genomeTonB family protein2e-0962.8
NC_010730:741842:766513766513767268756Sulfurihydrogenibium sp. YO3AOP1, complete genomeTonB family protein2e-0859.3