Pre_GI: BLASTP Hits

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Query: NC_004603:1115134:1134207 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1134207, End: 1134998, Length: 792

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012982:711122:717037717037717840804Hirschia baltica ATCC 49814, complete genomeresponse regulator receiver protein4e-54211
NC_014834:2206119:225847022584702259327858Rhodopseudomonas palustris DX-1 chromosome, complete genomehypothetical protein3e-50198
NC_014837:1144500:114978211497821150570789Pantoea sp. At-9b chromosome, complete genomeresponse regulator receiver protein4e-45181
NC_010102:997417:101329610132961014072777Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-37156
NC_008781:2575213:258533025853302586121792Polaromonas naphthalenivorans CJ2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-26119