Pre_GI: BLASTP Hits

Some Help

Query: NC_004578:6334735:6358486 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6358486, End: 6359448, Length: 963

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012560:1823861:182947818294781830455978Azotobacter vinelandii DJ, complete genomesodium:bile acid symporter family protein5e-87321
NC_021150:1823874:182949118294911830468978Azotobacter vinelandii CA6, complete genomesodium:bile acid symporter family protein5e-87321
NC_009434:608765:645151645151646140990Pseudomonas stutzeri A1501, complete genomesodium:bile acid symporter family protein5e-80297
NC_004578:5192110:521613952161395216882744Pseudomonas syringae pv. tomato str. DC3000, complete genometransporter, putative5e-70264
NC_007005:1636875:167558416755841676327744Pseudomonas syringae pv. syringae B728a, complete genomeBile acid:sodium symporter5e-70264
NC_019842:484933:537217537217538179963Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein3e-50199
NC_020272:3396800:340140534014053402367963Bacillus amyloliquefaciens IT-45, complete genomesodium/bile acid cotransporter Na(+)/bile acid cotransporter2e-50199
NC_020410:495184:532694532694533656963Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeputative transporter, bile acid/Na+ symporter family5e-49194
NC_013406:781308:799473799473800435963Paenibacillus sp. Y412MC10 chromosome, complete genomeBile acid:sodium symporter2e-43176
NC_009138:1583988:158398815839881584947960Herminiimonas arsenicoxydans, complete genomeputative Na+-dependent transporter7e-39161
NC_009138:467268:507380507380508354975Herminiimonas arsenicoxydans, complete genomeputative Na+-dependent transporter3e-38159
NC_015312:4658548:467808446780844679082999Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeBile acid:sodium symporter7e-2098.2
NC_014151:449732:449732449732450727996Cellulomonas flavigena DSM 20109 chromosome, complete genomeBile acid:sodium symporter1e-1997.8
NC_008740:3602367:3617556361755636185661011Marinobacter aquaeolei VT8, complete genomeBile acid:sodium symporter4e-1995.5
NC_019748:4129500:413845741384574139404948Stanieria cyanosphaera PCC 7437, complete genomeBile acid:sodium symporter2e-1067
NC_012803:691215:6912156912156922461032Micrococcus luteus NCTC 2665, complete genomearsenite efflux pump ACR3-like permease2e-0963.5
NC_007333:1743890:180661718066171807588972Thermobifida fusca YX, complete genomearsenite efflux pump1e-0860.5
NC_013947:4979000:498543649854364986371936Stackebrandtia nassauensis DSM 44728 chromosome, complete genomebile acid:sodium symporter2e-0860.5
NC_018867:179975:2035662035662046511086Dehalobacter sp. CF chromosome, complete genomeArsenite resistance protein arsB1e-0654.3
NC_008346:1047500:1067414106741410684901077Syntrophomonas wolfei subsp. wolfei str. Goettingen, completehypothetical protein1e-0653.9