Pre_GI: BLASTP Hits

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Query: NC_004578:1190000:1201509 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 1201509, End: 1203926, Length: 2418

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014153:2125551:2146609214660921487442136Thiomonas intermedia K12 chromosome, complete genomeRelaxase/mobilization nuclease family protein9e-50199
NC_012751:1296877:1296877129687712987691893Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeMobA relaxase/mobilization protein2e-47191
NC_004632:28470:2847028470304251956Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B,relaxase/mobilization nuclease MobA, putative2e-42174
NC_006350:3865584:3880126388012638821111986Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative plasmid conjugal transfer protein2e-32141
NC_016745:2028424:2042661204266120444391779Oceanimonas sp. GK1 chromosome, complete genomeconjugal transfer relaxase TraI1e-27125
NC_009663:2531876:2538536253853625401431608Sulfurovum sp. NBC37-1, complete genomeDNA relaxase TraI2e-27124
NC_008781:2655071:2668994266899426709731980Polaromonas naphthalenivorans CJ2, complete genomeRelaxase/mobilization nuclease family protein1e-26122
NC_008341:29038:5017150171522192049Nitrosomonas eutropha C91 plasmid1, complete sequenceRelaxase/mobilization nuclease family protein2e-20101
NC_006371:1743982:1771395177139517731611767Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical protein2e-20101
NC_012881:1802000:1828171182817118297871617Desulfovibrio salexigens DSM 2638, complete genomeRelaxase/mobilization nuclease family protein1e-1999
NC_015221:12389:3025430254318881635Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequencerelaxase/mobilization nuclease family protein2e-1998.6
NC_008347:2515921:253534325353432536254912Maricaulis maris MCS10, complete genomeRelaxase/mobilization nuclease family protein3e-1274.7
NC_006139:31500:4405644056450601005Desulfotalea psychrophila LSv54 plasmid large, complete sequencerelated to TraI protein (partial length)2e-1172
NC_015259:485015:5274555274555290591605Polymorphum gilvum SL003B-26A1 chromosome, complete genomeRelaxase/mobilization nuclease family protein1e-0758.9
NC_019960:1658657:1739684173968417407631080Prevotella dentalis DSM 3688 chromosome 1, complete sequencerelaxase/mobilization nuclease2e-0758.5
NC_015311:2626850:2663401266340126644801080Prevotella denticola F0289 chromosome, complete genomerelaxase/mobilization nuclease domain-containing protein3e-0758.2
NC_019968:382991:3854913854913865551065Prevotella dentalis DSM 3688 chromosome 2, complete sequencerelaxase/mobilization nuclease1e-0655.8