Pre_GI: BLASTP Hits

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Query: NC_004547:1174650:1182391 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 1182391, End: 1182576, Length: 186

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009792:3245368:3269805326980532715801776Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-1684
NC_011742:4655373:4662209466220946639931785Escherichia coli S88 chromosome, complete genomehypothetical protein1e-1478.2
NC_008563:4739333:4747547474754747493311785Escherichia coli APEC O1, complete genomeputative KAP family P-loop domain containing protein1e-1478.2
NC_013716:5201097:5258800525880052605841785Citrobacter rodentium ICC168, complete genomeputative P-loop ATPase family protein1e-1478.2
NC_004431:4270305:4299658429965843014421785Escherichia coli CFT073, complete genomehypothetical protein1e-1478.2
NC_010510:409469:4094694094694112441776Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeKAP P-loop domain protein2e-0961.2
NC_010162:8528116:8536406853640685383011896Sorangium cellulosum 'So ce 56', complete genomeP-loop ATPase3e-0650.8
NC_010515:2111691:2133783213378321356691887Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceKAP P-loop domain protein6e-0649.7
NC_008061:190287:2107852107852126711887Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceKAP P-loop6e-0649.7