Pre_GI: BLASTP Hits

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Query: NC_004547:1062410:1063490 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 1063490, End: 1064089, Length: 600

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:98488:131018131018131647630Pseudomonas syringae pv. syringae B728a, complete genomeregulatory protein, TetR1e-52206
NC_008752:3902637:391305439130543913665612Acidovorax avenae subsp. citrulli AAC00-1, complete genometranscriptional regulator, TetR family2e-48192
NC_011894:5056901:507420050742005074796597Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, TetR family1e-44179
NC_020126:9938287:994167999416799942269591Myxococcus stipitatus DSM 14675, complete genomeTetR family transcriptional regulator3e-26118
NC_008358:1623278:164025116402511640826576Hyphomonas neptunium ATCC 15444, complete genometranscriptional regulator, TetR family8e-23106
NC_008010:1:138201382014416597Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetranscriptional regulator, TetR family3e-1065.1
NC_012704:652589:6543696543696554061038Corynebacterium kroppenstedtii DSM 44385, complete genometranscriptional regulator, TetR family2e-0755.8
NC_020126:7661551:768145276814527682090639Myxococcus stipitatus DSM 14675, complete genomeTetR family transcriptional regulator9e-0753.5
NC_014218:1663486:166664816666481667313666Arcanobacterium haemolyticum DSM 20595 chromosome, complete genometranscriptional regulator, TetR family1e-0653.1