Pre_GI: BLASTP Hits

Some Help

Query: NC_004463:18497:42820 Bradyrhizobium japonicum USDA 110, complete genome

Start: 42820, End: 43365, Length: 546

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:18493:428124281243357546Bradyrhizobium japonicum USDA 6, complete genomeconjugal transfer protein precursor2e-81301
NC_007925:3933765:395422639542263954771546Rhodopseudomonas palustris BisB18, complete genomeconjugal transfer protein precursor3e-47187
NC_009720:4406991:444132044413204441865546Xanthobacter autotrophicus Py2, complete genomepeptidase S26C conjugative transfer signal peptidase TraF1e-43175
NC_009668:445134:513800513800514345546Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceconjugal transfer protein precursor8e-43172
NC_014834:872924:894178894178894723546Rhodopseudomonas palustris DX-1 chromosome, complete genomeconjugative transfer signal peptidase TraF1e-42172
NC_009720:622262:655257655257655802546Xanthobacter autotrophicus Py2, complete genomeconjugal transfer protein precursor2e-41168
NC_008686:1472899:147606614760661476608543Paracoccus denitrificans PD1222 chromosome 1, complete sequenceconjugal transfer protein precursor8e-40162
NC_011365:1135750:116187311618731162415543Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeputative conjugal transfer protein TraF3e-39161
NC_017249:3119000:312008131200813120593513Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein7e-37153
NC_016027:2512297:251408825140882514717630Gluconacetobacter xylinus NBRC 3288, complete genomeconjugal transfer protein precursor5e-33140
NC_010125:381711:398827398827399456630Gluconacetobacter diazotrophicus PAl 5, complete genomeputative conjugal transfer protein TraF3e-32137
NC_015186:2908387:291388729138872914426540Acidiphilium multivorum AIU301, complete genomeputative conjugal transfer protein TraF2e-23108
NC_015556:2265940:228680622868062287333528Pseudomonas fulva 12-X chromosome, complete genomePeptidase S26, conserved region2e-23108
NC_014100:2782000:279994627999462800458513Caulobacter segnis ATCC 21756 chromosome, complete genomepeptidase S26, conserved region2e-2099
NC_009719:1972545:197197919719791972557579Parvibaculum lavamentivorans DS-1 chromosome, complete genomeplasmid transfer protein TraF2e-1892
NC_008577:1455000:148007914800791480666588Shewanella sp. ANA-3 chromosome 1, complete sequenceputative conjugal transfer TRAF transmembrane protein3e-1891.3
NC_014910:242845:262595262595263194600Alicycliphilus denitrificans BC chromosome, complete genomepeptidase s26, conserved region protein6e-1890.1
NC_010338:2443765:244452124445212445039519Caulobacter sp. K31, complete genomeType IV secretory pathway protease TraF-like protein3e-1787.8
NC_015381:2859000:289326828932682893870603Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein4e-1787.4
NC_010943:1332243:134805613480561348631576Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane anchor conjugal transfer protein6e-1683.6
NC_016147:1961000:199013719901371990736600Pseudoxanthomonas spadix BD-a59 chromosome, complete genometype IV secretion system protein1e-1582.8
NC_014414:2540189:254347825434782544173696Parvularcula bermudensis HTCC2503 chromosome, complete genomeconjugal transfer protein2e-1478.6
NC_010170:4800000:482394348239434824533591Bordetella petrii, complete genomeconjugal transfer protein TraF1e-1272.4
NC_003295:2787371:280686628068662807465600Ralstonia solanacearum GMI1000, complete genomePROBABLE CONJUGAL TRANSFER TRAF TRANSMEMBRANE PROTEIN3e-1271.6
NC_014500:842493:867251867251867796546Dickeya dadantii 3937 chromosome, complete genometype IV secretory pathway, protease TraF3e-1271.2
NC_012982:711122:728334728334728825492Hirschia baltica ATCC 49814, complete genomeplasmid transfer protein TraF5e-1270.9
NC_008752:725189:749121749121749732612Acidovorax avenae subsp. citrulli AAC00-1, complete genomeputative conjugal transfer TRAF transmembrane protein7e-1270.1
NC_006526:1976779:199656919965691997324756Zymomonas mobilis subsp. mobilis ZM4, complete genomeconjugal transfer protein9e-0753.1
NC_011059:670345:670345670345671007663Prosthecochloris aestuarii DSM 271, complete genomeputative conjugal transfer protein TraF1e-0652.8