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Query: NC_004129:5204500:5211118 Pseudomonas fluorescens Pf-5, complete genome

Start: 5211118, End: 5211444, Length: 327

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:4028500:404331040433104043636327Pseudomonas syringae pv. phaseolicola 1448A, complete genomealginate biosynthesis transcriptional activator2e-48190
NC_012560:3505235:351459135145913514812222Azotobacter vinelandii DJ, complete genomeAlgZ-like DNA binding protein4e-24109
NC_021150:3505234:351459035145903514811222Azotobacter vinelandii CA6, complete genomeAlgZ-like DNA binding protein4e-24109
NC_009255:1369200:137922613792261379582357Burkholderia vietnamiensis G4 chromosome 2, complete sequenceArc domain-containing protein7e-1372.8
NC_010002:3785313:380321838032183803691474Delftia acidovorans SPH-1, complete genomeArc domain protein DNA binding domain protein3e-1270.5
NC_015563:3786192:378969837896983790099402Delftia sp. Cs1-4 chromosome, complete genomeArc domain-containing protein8e-1062.4
NC_015556:2265940:233165223316522331936285Pseudomonas fulva 12-X chromosome, complete genomehypothetical protein1e-0858.9
NC_011748:2655989:267328426732842673604321Escherichia coli 55989, complete genomeputative regulator protein; Arc-like DNA binding domain9e-0855.5
CU928145:2655989:267328426732842673604321Escherichia coli 55989 chromosome, complete genomeputative regulator protein; Arc-like DNA binding domain9e-0855.5
NC_007005:1705406:171913017191301719393264Pseudomonas syringae pv. syringae B728a, complete genomeArc-like DNA binding5e-0753.1
NC_008463:5246954:526014352601435260397255Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein8e-0752.4
NC_018080:5091772:510681651068165107085270Pseudomonas aeruginosa DK2 chromosome, complete genomeDNA binding protein9e-0752.4
NC_009937:958576:971436971436971825390Azorhizobium caulinodans ORS 571, complete genomeconserved hypothetical protein1e-0652
NC_009656:4527457:458569645856964585965270Pseudomonas aeruginosa PA7 chromosome, complete genomeputative DNA binding protein7e-0649.3