Pre_GI: BLASTP Hits

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Query: NC_004129:3452885:3464703 Pseudomonas fluorescens Pf-5, complete genome

Start: 3464703, End: 3467009, Length: 2307

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:3220500:3235532323553232378172286Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein0739
NC_007510:1959883:2012084201208420144082325Burkholderia sp. 383 chromosome 1, complete sequencehypothetical protein0648
NC_020209:1949500:1958027195802719601412115Pseudomonas poae RE*1-1-14, complete genomehypothetical protein3e-23110
NC_010322:583842:5922595922595943282070Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein1e-1172.4
NC_020829:636773:6446296446296466111983Pseudomonas denitrificans ATCC 13867, complete genomeintegrase family protein3e-1170.9
NC_014562:2563466:2591394259139425932321839Pantoea vagans C9-1 chromosome, complete genomeTransposase B from transposon Tn5545e-1170.5
NC_005773:4899252:4904499490449949067332235Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein1e-1068.9
NC_004547:1174650:1189894118989411918581965Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase1e-1068.9
NC_020829:940692:9877309877309899672238Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein2e-0965.5
NC_005773:4282840:4292503429250342943741872Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein3e-0964.3
NC_009524:1369395:1377817137781713797841968Psychrobacter sp. PRwf-1 chromosome, complete genomehypothetical protein5e-0963.9
NC_014640:6815264:6837004683700468390132010Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein3e-0861.2
NC_015563:2018038:2028877202887720309462070Delftia sp. Cs1-4 chromosome, complete genomeintegrase family protein8e-0859.7
NC_014366:478000:4868774868774888862010Gamma proteobacterium HdN1, complete genomeputative integrase2e-0758.5
NC_015458:2998000:3005609300560930076182010Pusillimonas sp. T7-7 chromosome, complete genomeintegrase family protein2e-0758.2
NC_009665:639914:6451236451236472042082Shewanella baltica OS185 chromosome, complete genomehypothetical protein8e-0756.6
NC_011663:674069:6792846792846813652082Shewanella baltica OS223 chromosome, complete genomehypothetical protein8e-0756.6
NC_015726:406450:4168814168814189592079Cupriavidus necator N-1 chromosome 1, complete sequenceintegrase6e-0756.6
NC_010571:2943369:2953324295332429553392016Opitutus terrae PB90-1, complete genomehypothetical protein9e-0756.2
NC_012917:1840172:1853169185316918548541686Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeDNA-binding protein1e-0655.8
NC_003919:3396136:3406559340655934084091851Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein1e-0655.8