Pre_GI: BLASTP Hits

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Query: NC_004129:2234851:2252612 Pseudomonas fluorescens Pf-5, complete genome

Start: 2252612, End: 2253559, Length: 948

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007643:2722265:272859927285992729564966Rhodospirillum rubrum ATCC 11170, complete genomeMethylase involved in ubiquinone/menaquinone biosynthesis-like5e-25115
NC_007650:722961:733078733078734055978Burkholderia thailandensis E264 chromosome II, complete sequencehypothetical protein6e-1891.7
NC_009075:2428248:243363624336362434616981Burkholderia pseudomallei 668 chromosome II, complete sequencehypothetical protein8e-1891.3
NC_009078:2351046:235642723564272357407981Burkholderia pseudomallei 1106a chromosome II, complete sequencehypothetical protein8e-1891.3
NC_006349:400807:410549410549411529981Burkholderia mallei ATCC 23344 chromosome 2, complete sequencehypothetical protein9e-1891.3
NC_006351:2398403:240390924039092404769861Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein3e-1582.8
NC_009511:5362705:537369253736925374585894Sphingomonas wittichii RW1 chromosome, complete genometype 12 methyltransferase2e-1273.2
NC_014217:16398:3096930969324771509Starkeya novella DSM 506 chromosome, complete genomehypothetical protein2e-0653.5