Pre_GI: BLASTP Hits

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Query: NC_003888:6233478:6247184 Streptomyces coelicolor A3(2), complete genome

Start: 6247184, End: 6249421, Length: 2238

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015957:1968587:1984817198481719871142298Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein7e-128458
NC_003155:3095123:3107861310786131101612301Streptomyces avermitilis MA-4680, complete genomehypothetical protein6e-65249
NC_015953:2681331:2692929269292926950222094Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein8e-47189
NC_015957:1968587:1991645199164519938642220Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein2e-40168
NC_013947:3534209:3534209353420935363982190Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein7e-1273.2