Pre_GI: BLASTP Hits

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Query: NC_003888:4314389:4317222 Streptomyces coelicolor A3(2), complete genome

Start: 4317222, End: 4317599, Length: 378

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013947:2351208:235298123529812353370390Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein1e-21102
NC_002944:1781905:178301817830181783407390Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein9e-1785.5
NC_010002:960027:965273965273965620348Delftia acidovorans SPH-1, complete genomemembrane protein of unknown function1e-1375.1
NC_015563:6357653:637478963747896375136348Delftia sp. Cs1-4 chromosome, complete genomehypothetical protein1e-1375.1
NC_007947:1556437:157919915791991579612414Methylobacillus flagellatus KT, complete genomemembrane protein of unknown function2e-1270.9
NC_020054:6111419:611282261128226113157336Fibrella aestuarina BUZ 2 drat genomemembrane protein of unknown function3e-1270.5
NC_015318:1151422:115871411587141159052339Hippea maritima DSM 10411 chromosome, complete genomehypothetical protein1e-1168.2
NC_014931:6415940:641594064159406416293354Variovorax paradoxus EPS chromosome, complete genomemembrane protein of unknown function4e-1063.5
NC_008781:4178115:418169041816904182043354Polaromonas naphthalenivorans CJ2, complete genomemembrane protein of unknown function2e-0960.8
NC_015573:2323268:234458423445842344922339Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehypothetical protein2e-0857.8
NC_014738:55782:583115831158655345Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,hypothetical protein2e-0857.4
NC_014041:661352:667972667972668274303Zunongwangia profunda SM-A87 chromosome, complete genomemembrane protein2e-0857.4
NC_018870:2316499:231887823188782319252375Thermacetogenium phaeum DSM 12270 chromosome, complete genomehypothetical protein7e-0855.8
NC_009925:5957806:596275159627515963110360Acaryochloris marina MBIC11017, complete genomemembrane protein of unknown function1e-0755.5
NC_004193:2522000:253965425396542540010357Oceanobacillus iheyensis HTE831, complete genomehypothetical protein2e-0754.7
NC_014829:3822125:382544038254403825796357Bacillus cellulosilyticus DSM 2522 chromosome, complete genomemembrane protein of unknown function2e-0754.7
NC_015422:4822636:482829048282904828646357Alicycliphilus denitrificans K601 chromosome, complete genomehypothetical protein3e-0753.9
NC_013791:1033700:105053310505331050874342Bacillus pseudofirmus OF4 chromosome, complete genomehypothetical protein5e-0753.1
NC_008261:381297:397006397006397377372Clostridium perfringens ATCC 13124, complete genomehypothetical protein7e-0649.3
NC_014915:3207300:322685432268543227216363Geobacillus sp. Y412MC52 chromosome, complete genomemembrane protein of unknown function8e-0649.3
NC_013411:3201331:322088532208853221247363Geobacillus sp. Y412MC61, complete genomemembrane protein of unknown function8e-0649.3