Pre_GI: BLASTP Hits

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Query: NC_003366:2356148:2374217 Clostridium perfringens str. 13, complete genome

Start: 2374217, End: 2375455, Length: 1239

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:2242432:2260576226057622618141239Clostridium perfringens SM101, complete genomeputative UV damage endonuclease0796
NC_013204:3491441:3497384349738434986461263Eggerthella lenta DSM 2243, complete genomeUV-endonuclease UvdE4e-72271
NC_014171:235558:237256237256238218963Bacillus thuringiensis BMB171 chromosome, complete genomeUV damage endonuclease1e-35151
NC_016641:2476634:2494860249486024958611002Paenibacillus terrae HPL-003 chromosome, complete genomeUV DNA damage endonuclease (UV-endonuclease)3e-31136
NC_013730:2751484:278565627856562786549894Spirosoma linguale DSM 74, complete genomeUV-endonuclease UvdE5e-28125
NC_021171:4674086:468989346898934690858966Bacillus sp. 1NLA3E, complete genomeUV damage endonuclease5e-27122
NC_007498:1562270:157571115757111576631921Pelobacter carbinolicus DSM 2380, complete genomeUV damage repair endonuclease3e-23109
NC_012796:4075583:413644041364404137348909Desulfovibrio magneticus RS-1, complete genomeUV DNA damage endonuclease8e-23108
NC_014306:4901390:493338349333834934330948Erwinia billingiae Eb661, complete genomePutative endonuclease5e-21102
NC_008609:142471:146650146650147327678Pelobacter propionicus DSM 2379, complete genomeUV-endonuclease-like protein2e-1997.4
NC_014831:866614:8811598811598823401182Thermaerobacter marianensis DSM 12885 chromosome, complete genomeUV-endonuclease UvdE1e-1894.4
NC_010320:1769486:178265417826541782827174Thermoanaerobacter sp. X514 chromosome, complete genomehypothetical protein2e-1273.9
NC_012526:2155947:216099821609982161903906Deinococcus deserti VCD115, complete genomeputative UV DNA damage endonuclease1e-1067.8