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Query: NC_003308:1 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 1, End: 35699, Length: 35699

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003065:27163271636910241940Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence066980BLASTN svgBLASTP svg
NC_014910:19125521912552193924626695Alicycliphilus denitrificans BC chromosome, complete genome7e-48200BLASTN svgBLASTP svg
NC_015186:21656282165628218853522908Acidiphilium multivorum AIU301, complete genome2e-36163BLASTN svgBLASTP svg
NC_019973:5716453*5716453575629339841Mesorhizobium australicum WSM2073, complete genome3e-25125BLASTN svgBLASTP svg
NC_015675:63421646342164638209939936Mesorhizobium opportunistum WSM2075 chromosome, complete genome3e-25125BLASTN svgBLASTP svg
NC_014923:5787493*5787493583009942607Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete3e-25125BLASTN svgBLASTP svg
NC_003296:55683655683661181954984Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete3e-1075.8BLASTN svgBLASTP svg
NC_011982:20678420678423168124898Agrobacterium vitis S4 plasmid pTiS4, complete sequence1e-0663.9BLASTN svgBLASTP svg
NC_010172:57304657304660029627251Methylobacterium extorquens PA1, complete genome1e-0663.9BLASTN svgBLASTP svg