Pre_GI: BLASTP Hits

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Query: NC_003305:693810:715038 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 715038, End: 715496, Length: 459

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003063:1358738:135926013592601359718459Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein7e-79291
NC_016627:2524307:253095125309512531400450Clostridium clariflavum DSM 19732 chromosome, complete genomerrf2 family protein, putative transcriptional regulator2e-0754.7
NC_011999:728353:735879735879736295417Macrococcus caseolyticus JCSC5402, complete genomehypothetical protein4e-0753.5
NC_009720:3377071:337865933786593379108450Xanthobacter autotrophicus Py2, complete genomeBadM/Rrf2 family transcriptional regulator5e-0650.1