Pre_GI: BLASTN Hits

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Query: NC_014169:1442435 Bifidobacterium longum subsp. longum JDM301 chromosome, complete

Start: 1442435, End: 1460781, Length: 18347

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. This organism is found in adult humans and formula fed infants as a normal component of gut flora.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015385:2050648*2050648208291832271Treponema succinifaciens DSM 2489 chromosome, complete genome04252BLASTN svgBLASTP svg
NC_012815:1092795*1092795111559922805Bifidobacterium animalis subsp. lactis DSM 10140, complete genome04246BLASTN svgBLASTP svg
NC_012814:1092860*1092860111560222743Bifidobacterium animalis subsp. lactis Bl-04, complete genome04246BLASTN svgBLASTP svg
NC_015214:18531061853106188009926994Lactobacillus acidophilus 30SC chromosome, complete genome03915BLASTN svgBLASTP svg
NC_008011:213386*21338624949536110Lawsonia intracellularis PHE/MN1-00, complete genome02319BLASTN svgBLASTP svg
NC_010816:62184962184964504823200Bifidobacterium longum DJO10A, complete genome1e-84321BLASTN svgBLASTP svg
NC_015052:1569255*1569255159297923725Bifidobacterium longum subsp. infantis 157F, complete genome1e-84321BLASTN svgBLASTP svg
NC_015052:47194447194450736635423Bifidobacterium longum subsp. infantis 157F, complete genome1e-84321BLASTN svgBLASTP svg
NC_015067:45962645962649282633201Bifidobacterium longum subsp. longum JCM 1217, complete genome1e-84321BLASTN svgBLASTP svg
NC_009089:12830001283000132421841219Clostridium difficile 630, complete genome3e-42180BLASTN svgBLASTP svg
NC_015067:2282000*2282000230417622177Bifidobacterium longum subsp. longum JCM 1217, complete genome1e-26129BLASTN svgBLASTP svg
NC_014830:12522491252249128855336305Intrasporangium calvum DSM 43043 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_009921:53315655331565535374522181Frankia sp. EAN1pec, complete genome3e-21111BLASTN svgBLASTP svg
NC_009921:32558333255833327496419132Frankia sp. EAN1pec, complete genome6e-19103BLASTN svgBLASTP svg
NC_015067:21360482136048216896932922Bifidobacterium longum subsp. longum JCM 1217, complete genome3e-18101BLASTN svgBLASTP svg
NC_009142:40463764046376406758021205Saccharopolyspora erythraea NRRL 2338, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_013169:23514752351475238021528741Kytococcus sedentarius DSM 20547, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_013169:1545890*1545890156556719678Kytococcus sedentarius DSM 20547, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_011886:20973492097349211562818280Arthrobacter chlorophenolicus A6, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_006087:14256821425682144554519864Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_006087:1483761*1483761150739223632Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_006087:28490*284907567147182Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_006087:76508176508178509920019Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_008268:34180003418000344059922600Rhodococcus sp. RHA1, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_013169:1845735*1845735186893023196Kytococcus sedentarius DSM 20547, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010617:26398526398528723123247Kocuria rhizophila DC2201, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_019673:27333272733327275459921273Saccharothrix espanaensis DSM 44229 complete genome4e-1487.7BLASTN svgBLASTP svg
NC_010524:93319193319195763824448Leptothrix cholodnii SP-6, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_010524:33023983302398332924326846Leptothrix cholodnii SP-6, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_004668:2198027*2198027227009972073Enterococcus faecalis V583, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_008699:56500565008084424345Nocardioides sp. JS614, complete genome1e-1385.7BLASTN svgBLASTP svg
NC_008699:590000*59000061720127202Nocardioides sp. JS614, complete genome1e-1385.7BLASTN svgBLASTP svg
NC_014215:22955002295500232183626337Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,1e-1385.7BLASTN svgBLASTP svg
NC_015957:73482697348269739671748449Streptomyces violaceusniger Tu 4113 chromosome, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_019673:13847951384795141142926635Saccharothrix espanaensis DSM 44229 complete genome9e-1279.8BLASTN svgBLASTP svg
NC_013739:717352*71735274820730856Conexibacter woesei DSM 14684, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_010002:39808323980832399913918308Delftia acidovorans SPH-1, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_008789:13935261393526142028526760Halorhodospira halophila SL1, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_015656:2484749*2484749251548430736Frankia symbiont of Datisca glomerata chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_020133:5485528*5485528550857423047Mycobacterium liflandii 128FXT, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_015312:63989316398931641727718347Pseudonocardia dioxanivorans CB1190 chromosome, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_015312:61752*617528144419693Pseudonocardia dioxanivorans CB1190 chromosome, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_014410:80050080050084758147082Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,9e-0969.9BLASTN svgBLASTP svg
NC_008023:1070986*1070986111333242347Streptococcus pyogenes MGAS2096, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_014246:1402500*1402500143562533126Mobiluncus curtisii ATCC 43063 chromosome, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_014393:47754524775452483914063689Clostridium cellulovorans 743B chromosome, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_014801:112612626126Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet,3e-0867.9BLASTN svgBLASTP svg
NC_020908:301563*30156332432722765Octadecabacter arcticus 238, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_018524:301992*30199232409922108Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_015064:2341152*2341152237105229901Acidobacterium sp. MP5ACTX9 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_013715:1606396*1606396162508418689Rothia mucilaginosa DY-18, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_007974:23234362323436234121717782Ralstonia metallidurans CH34 chromosome 2, complete sequence1e-0765.9BLASTN svgBLASTP svg
NC_009142:55192085519208554891729710Saccharopolyspora erythraea NRRL 2338, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_009434:28147428147430109919626Pseudomonas stutzeri A1501, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_015436:27082027082029216721348Spirochaeta coccoides DSM 17374 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013757:72998672998676859938614Geodermatophilus obscurus DSM 43160, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_021175:15976131597613162110823496Streptococcus oligofermentans AS 1.3089, complete genome9e-0660BLASTN svgBLASTP svg
NC_014974:758129*75812978338525257Thermus scotoductus SA-01 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_013895:13328321332832138009947268Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete9e-0660BLASTN svgBLASTP svg
NC_010717:12950012950015009920600Xanthomonas oryzae pv. oryzae PXO99A, complete genome9e-0660BLASTN svgBLASTP svg
NC_009089:58165558165560656324909Clostridium difficile 630, complete genome9e-0660BLASTN svgBLASTP svg
NC_002758:43446243446245281818357Staphylococcus aureus subsp. aureus Mu50, complete genome9e-0660BLASTN svgBLASTP svg