Pre_GI: BLASTN Hits

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Query: NC_012490:2006716 Rhodococcus erythropolis PR4, complete genome

Start: 2006716, End: 2033986, Length: 27271

Host Lineage: Rhodococcus erythropolis; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Rhodococcus erythropolis PR4 (NBRC 100887) was isolated from Pacific Ocean seawater. It has the enzymes necessary for the degradation of different alkanes, such as pristane. PR4 shows tolerance to hydrocarbons and it is capable of producing several compounds with medical, industrial, and nutritional applications such as beta-carotenes (i.e. astaxanthin) and fatty acid-containing extracellular polysaccharides (i.e. mucoidan). Rhodococcus species are soil bacteria with remarkable metabolic versatility leading to several possible applications in the pharmaceutical and chemical industries and for industrial bioremediation. This species has shown potential in producing different valuable compounds. As examples, some Rhodococcus erythropolis strains posses a nitrile hydratase, an enzyme used for the industrial production of acrylamide and nicotinamide, while other strains are capable of transforming indene to 1,2-indandiol, a key precursor of the AIDS drug Crixivan.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008268:5781604*5781604581424432641Rhodococcus sp. RHA1, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_013595:71957647195764721894723184Streptosporangium roseum DSM 43021, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_008268:2313583*2313583234448830906Rhodococcus sp. RHA1, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_010612:3745332*3745332378131835987Mycobacterium marinum M, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_003155:3913789*3913789393748923701Streptomyces avermitilis MA-4680, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015711:6796082*6796082684217246091Myxococcus fulvus HW-1 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015711:6522808*6522808656473541928Myxococcus fulvus HW-1 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_007777:28410002841000290393262933Frankia sp. CcI3, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_008278:2732890*2732890278559152702Frankia alni ACN14a, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008278:2772726*2772726280322330498Frankia alni ACN14a, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_012522:2031786*2031786206157229787Rhodococcus opacus B4, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_012522:5952307*5952307597971027404Rhodococcus opacus B4, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015564:48499448499451314828155Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_020126:3383902*3383902342138737486Myxococcus stipitatus DSM 14675, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013722:1816561*1816561186559949039Xanthomonas albilineans, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013722:1785692*1785692183919253501Xanthomonas albilineans, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014659:4299552*4299552434331043759Rhodococcus equi 103S, complete genome8e-0763.9BLASTN svgBLASTP svg