Query: NC_011991:65368 Agrobacterium vitis S4 plasmid pAtS4b, complete sequence
Start: 65368, End: 91971, Length: 26604
Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria
General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_002678:5060670 | 5060670 | 5112833 | 52164 | Mesorhizobium loti MAFF303099, complete genome | 0 | 1114 | BLASTN svg | BLASTP svg |
NC_007762:88979 | 88979 | 114840 | 25862 | Rhizobium etli CFN 42 plasmid p42a, complete sequence | 3e-65 | 258 | BLASTN svg | BLASTP svg |
NC_007494:27084* | 27084 | 45330 | 18247 | Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence | 1e-64 | 256 | BLASTN svg | BLASTP svg |
NC_012811:227541 | 227541 | 271116 | 43576 | Methylobacterium extorquens AM1 megaplasmid, complete sequence | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_012808:3897751 | 3897751 | 3922639 | 24889 | Methylobacterium extorquens AM1, complete genome | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_013856:189768 | 189768 | 207824 | 18057 | Azospirillum sp. B510 plasmid pAB510b, complete sequence | 6e-20 | 107 | BLASTN svg | BLASTP svg |
NC_011987:53760 | 53760 | 83099 | 29340 | Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence | 9e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_020908:4550414 | 4550414 | 4574599 | 24186 | Octadecabacter arcticus 238, complete genome | 9e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_014006:2999500* | 2999500 | 3041998 | 42499 | Sphingobium japonicum UT26S chromosome 1, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_012586:897148 | 897148 | 921106 | 23959 | Rhizobium sp. NGR234 plasmid pNGR234b, complete sequence | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_007493:546000* | 546000 | 568757 | 22758 | Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_010172:4064087* | 4064087 | 4103099 | 39013 | Methylobacterium extorquens PA1, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_012724:2068588 | 2068588 | 2096117 | 27530 | Burkholderia glumae BGR1 chromosome 1, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |