Pre_GI: BLASTN Hits

Some Help

Query: NC_011094:1584038 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 1584038, End: 1606666, Length: 22629

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003197:1611302*1611302163313721836Salmonella typhimurium LT2, complete genome017720BLASTN svgBLASTP svg
NC_011149:15784511578451159811519665Salmonella enterica subsp. enterica serovar Agona str. SL483,016540BLASTN svgBLASTP svg
NC_003198:14632531463253148503221780Salmonella enterica subsp. enterica serovar Typhi str. CT18,012220BLASTN svgBLASTP svg
NC_010067:14140001414000143680422805Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete01445BLASTN svgBLASTP svg
NC_011740:27374672737467275914021674Escherichia fergusonii ATCC 35469, complete genome0656BLASTN svgBLASTP svg
NC_013716:16182491618249164307824830Citrobacter rodentium ICC168, complete genome7e-161575BLASTN svgBLASTP svg
NC_015277:325207*32520734606120855Sphingobacterium sp. 21 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010634:20046532004653202887424222Yersinia pseudotuberculosis PB1/+, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007947:1229807*1229807125158321777Methylobacillus flagellatus KT, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010498:4821519*4821519484497023452Escherichia coli SMS-3-5, complete genome3e-0661.9BLASTN svgBLASTP svg