Pre_GI: BLASTN Hits

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Query: NC_010572:33724 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 33724, End: 53099, Length: 19376

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010572:84939468493946855999966054Streptomyces griseus subsp. griseus NBRC 13350, complete genome014510BLASTN svgBLASTP svg
NC_010572:820008200014493162932Streptomyces griseus subsp. griseus NBRC 13350, complete genome01762BLASTN svgBLASTP svg
NC_003903:16782516782520035432530Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence2e-46194BLASTN svgBLASTP svg
NC_015434:26577812657781268051822738Verrucosispora maris AB-18-032 chromosome, complete genome5e-32147BLASTN svgBLASTP svg
NC_014210:5309121*5309121533359924479Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,5e-32147BLASTN svgBLASTP svg
NC_013729:21332942133294215209918806Kribbella flavida DSM 17836, complete genome3e-30141BLASTN svgBLASTP svg
NC_015957:8677395*8677395870777930385Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_008697:55406554068532429919Nocardioides sp. JS614 plasmid pNOCA01, complete sequence6e-1073.8BLASTN svgBLASTP svg
NC_015656:14695011469501148804818548Frankia symbiont of Datisca glomerata chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg