Query: NC_009012:2953638 Clostridium thermocellum ATCC 27405, complete genome
Start: 2953638, End: 3017543, Length: 63906
Host Lineage: Clostridium thermocellum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria
General Information: This strain is a well studied producer of endoglucanase and several restriction endonucleases. Thermophilic cellulose degrading bacterium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a thermophilic anaerobe that produces an extracellular enzyme system capable of degrading crystalline cellulose to soluble sugars that are further utilized as the carbon source for growth.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
| Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
|---|
| NC_009012:1857845* | 1857845 | 1880099 | 22255 | Clostridium thermocellum ATCC 27405, complete genome | 0 | 3380 | BLASTN svg | BLASTP svg |
| NC_020134:420500 | 420500 | 447626 | 27127 | Clostridium stercorarium subsp. stercorarium DSM 8532, complete | 1e-56 | 230 | BLASTN svg | BLASTP svg |
| NC_011898:3973627* | 3973627 | 4015952 | 42326 | Clostridium cellulolyticum H10, complete genome | 5e-41 | 178 | BLASTN svg | BLASTP svg |
| NC_014376:3796990* | 3796990 | 3820563 | 23574 | Clostridium saccharolyticum WM1 chromosome, complete genome | 1e-32 | 151 | BLASTN svg | BLASTP svg |
| NC_007907:2249607 | 2249607 | 2272501 | 22895 | Desulfitobacterium hafniense Y51, complete genome | 6e-28 | 135 | BLASTN svg | BLASTP svg |
| NC_009012:2927793* | 2927793 | 2950117 | 22325 | Clostridium thermocellum ATCC 27405, complete genome | 1e-19 | 107 | BLASTN svg | BLASTP svg |
| NC_014410:8694* | 8694 | 28775 | 20082 | Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome, | 1e-16 | 97.6 | BLASTN svg | BLASTP svg |
| NC_019970:8938* | 8938 | 29669 | 20732 | Thermoanaerobacterium thermosaccharolyticum M0795, complete genome | 1e-16 | 97.6 | BLASTN svg | BLASTP svg |
| NC_014150:2501299 | 2501299 | 2524729 | 23431 | Brachyspira murdochii DSM 12563 chromosome, complete genome | 2e-15 | 93.7 | BLASTN svg | BLASTP svg |
| NC_012225:1213421 | 1213421 | 1236599 | 23179 | Brachyspira hyodysenteriae WA1, complete genome | 2e-15 | 93.7 | BLASTN svg | BLASTP svg |
| NC_016048:3983500* | 3983500 | 4002356 | 18857 | Oscillibacter valericigenes Sjm18-20, complete genome | 8e-15 | 91.7 | BLASTN svg | BLASTP svg |
| NC_019908:436000 | 436000 | 455497 | 19498 | Brachyspira pilosicoli P43/6/78 chromosome, complete genome | 2e-12 | 83.8 | BLASTN svg | BLASTP svg |
| NC_013411:2767400 | 2767400 | 2813191 | 45792 | Geobacillus sp. Y412MC61, complete genome | 3e-11 | 79.8 | BLASTN svg | BLASTP svg |
| NC_014915:1909275 | 1909275 | 1954266 | 44992 | Geobacillus sp. Y412MC52 chromosome, complete genome | 3e-11 | 79.8 | BLASTN svg | BLASTP svg |
| NC_015555:4478 | 4478 | 22769 | 18292 | Thermoanaerobacterium xylanolyticum LX-11 chromosome, complete | 5e-10 | 75.8 | BLASTN svg | BLASTP svg |
| NC_012778:1946924 | 1946924 | 1970786 | 23863 | Eubacterium eligens ATCC 27750, complete genome | 5e-10 | 75.8 | BLASTN svg | BLASTP svg |
| NC_009720:2489003* | 2489003 | 2519805 | 30803 | Xanthobacter autotrophicus Py2, complete genome | 2e-09 | 73.8 | BLASTN svg | BLASTP svg |
| NC_011898:3159411* | 3159411 | 3205197 | 45787 | Clostridium cellulolyticum H10, complete genome | 3e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_013517:104480* | 104480 | 125099 | 20620 | Sebaldella termitidis ATCC 33386, complete genome | 3e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_015732:3017387 | 3017387 | 3044108 | 26722 | Spirochaeta caldaria DSM 7334 chromosome, complete genome | 3e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_015589:1630461* | 1630461 | 1658464 | 28004 | Desulfotomaculum ruminis DSM 2154 chromosome, complete genome | 1e-07 | 67.9 | BLASTN svg | BLASTP svg |
| NC_011898:1558208* | 1558208 | 1592788 | 34581 | Clostridium cellulolyticum H10, complete genome | 1e-07 | 67.9 | BLASTN svg | BLASTP svg |
| NC_015958:11511 | 11511 | 30099 | 18589 | Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genome | 5e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_011126:281926 | 281926 | 304759 | 22834 | Hydrogenobaculum sp. Y04AAS1, complete genome | 2e-06 | 63.9 | BLASTN svg | BLASTP svg |
| NC_020409:363114* | 363114 | 387599 | 24486 | Desulfovibrio piezophilus str. nov C1TLV30 chromosome, complete | 8e-06 | 61.9 | BLASTN svg | BLASTP svg |
| NC_007516:774489* | 774489 | 816164 | 41676 | Synechococcus sp. CC9605, complete genome | 8e-06 | 61.9 | BLASTN svg | BLASTP svg |