Query: NC_008380:4968492 Rhizobium leguminosarum bv. viciae 3841, complete genome
Start: 4968492, End: 4988099, Length: 19608
Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria
General Information: This biovar nodulates legumes in the Tribe Viciae (Vicia, Pisum, Lathyrus, Lens). This strain is a spontaneous streptomycin-resistant mutant of strain 300. Nitrogen-fixing plant symbiont. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_003047:3419212* | 3419212 | 3450662 | 31451 | Sinorhizobium meliloti 1021, complete genome | 0 | 644 | BLASTN svg | BLASTP svg |
NC_014923:1249267* | 1249267 | 1272911 | 23645 | Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete | 1e-103 | 385 | BLASTN svg | BLASTP svg |
NC_015857:1809500* | 1809500 | 1835662 | 26163 | Brucella pinnipedialis B2/94 chromosome chromosome 1, complete | 3e-58 | 234 | BLASTN svg | BLASTP svg |
NC_010742:1794000* | 1794000 | 1819099 | 25100 | Brucella abortus S19 chromosome 1, complete sequence | 3e-58 | 234 | BLASTN svg | BLASTP svg |
NC_010167:1287000* | 1287000 | 1313784 | 26785 | Brucella suis ATCC 23445 chromosome II, complete sequence | 3e-58 | 234 | BLASTN svg | BLASTP svg |
NC_010103:1777000* | 1777000 | 1804188 | 27189 | Brucella canis ATCC 23365 chromosome I, complete sequence | 3e-58 | 234 | BLASTN svg | BLASTP svg |
NC_007618:1792500* | 1792500 | 1820000 | 27501 | Brucella melitensis biovar Abortus 2308 chromosome I, complete | 3e-58 | 234 | BLASTN svg | BLASTP svg |
NC_006932:1795500* | 1795500 | 1821781 | 26282 | Brucella abortus biovar 1 str. 9-941 chromosome I, complete | 3e-58 | 234 | BLASTN svg | BLASTP svg |
NC_004310:1777721* | 1777721 | 1806013 | 28293 | Brucella suis 1330 chromosome I, complete sequence | 3e-58 | 234 | BLASTN svg | BLASTP svg |
NC_009667:1076718* | 1076718 | 1098862 | 22145 | Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence | 2e-53 | 218 | BLASTN svg | BLASTP svg |
NC_003317:190975* | 190975 | 216270 | 25296 | Brucella melitensis 16M chromosome I, complete sequence | 7e-53 | 216 | BLASTN svg | BLASTP svg |
NC_002678:3210751* | 3210751 | 3232099 | 21349 | Mesorhizobium loti MAFF303099, complete genome | 2e-31 | 145 | BLASTN svg | BLASTP svg |
NC_007925:138927* | 138927 | 171099 | 32173 | Rhodopseudomonas palustris BisB18, complete genome | 8e-28 | 133 | BLASTN svg | BLASTP svg |
NC_009720:216589* | 216589 | 240975 | 24387 | Xanthobacter autotrophicus Py2, complete genome | 1e-26 | 129 | BLASTN svg | BLASTP svg |
NC_008435:604772* | 604772 | 648498 | 43727 | Rhodopseudomonas palustris BisA53, complete genome | 5e-26 | 127 | BLASTN svg | BLASTP svg |
NC_014100:533322* | 533322 | 561900 | 28579 | Caulobacter segnis ATCC 21756 chromosome, complete genome | 7e-25 | 123 | BLASTN svg | BLASTP svg |
NC_007404:974461 | 974461 | 1018439 | 43979 | Thiobacillus denitrificans ATCC 25259, complete genome | 2e-22 | 115 | BLASTN svg | BLASTP svg |
NC_002927:4130697* | 4130697 | 4151929 | 21233 | Bordetella bronchiseptica RB50, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_002928:3715492* | 3715492 | 3734001 | 18510 | Bordetella parapertussis 12822, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_002929:2589202* | 2589202 | 2612099 | 22898 | Bordetella pertussis Tohama I, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_003295:2507850* | 2507850 | 2544154 | 36305 | Ralstonia solanacearum GMI1000, complete genome | 1e-17 | 99.6 | BLASTN svg | BLASTP svg |
NC_010172:280092* | 280092 | 309840 | 29749 | Methylobacterium extorquens PA1, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_010682:2642269* | 2642269 | 2665099 | 22831 | Ralstonia pickettii 12J chromosome 1, complete sequence | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_010725:356609* | 356609 | 377300 | 20692 | Methylobacterium populi BJ001, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_011757:276953* | 276953 | 301599 | 24647 | Methylobacterium chloromethanicum CM4, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_012808:157156* | 157156 | 186099 | 28944 | Methylobacterium extorquens AM1, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_012856:2266187* | 2266187 | 2285763 | 19577 | Ralstonia pickettii 12D chromosome 1, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_013446:4281250* | 4281250 | 4307625 | 26376 | Comamonas testosteroni CNB-2, complete genome | 7e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_007494:1* | 1 | 20044 | 20044 | Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence | 3e-15 | 91.7 | BLASTN svg | BLASTP svg |
NC_008702:1432952* | 1432952 | 1479977 | 47026 | Azoarcus sp. BH72, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_015422:1116359* | 1116359 | 1143104 | 26746 | Alicycliphilus denitrificans K601 chromosome, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_014932:1232346* | 1232346 | 1309682 | 77337 | Bartonella clarridgeiae 73, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_008781:3508784* | 3508784 | 3533389 | 24606 | Polaromonas naphthalenivorans CJ2, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_012483:30784* | 30784 | 84961 | 54178 | Acidobacterium capsulatum ATCC 51196, complete genome | 9e-09 | 69.9 | BLASTN svg | BLASTP svg |
NC_014721:2135500* | 2135500 | 2195875 | 60376 | Caldicellulosiruptor kristjanssonii 177R1B chromosome, complete | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_013209:2032500* | 2032500 | 2055746 | 23247 | Acetobacter pasteurianus IFO 3283-01, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_012034:2555447* | 2555447 | 2587599 | 32153 | Anaerocellum thermophilum DSM 6725, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_013166:1841446* | 1841446 | 1859693 | 18248 | Kangiella koreensis DSM 16069, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_012559:1228280* | 1228280 | 1274613 | 46334 | Laribacter hongkongensis HLHK9, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |