Query: NC_008268:1748635 Rhodococcus sp. RHA1, complete genome
Start: 1748635, End: 1772396, Length: 23762
Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
| Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
|---|
| NC_019673:6362458* | 6362458 | 6391022 | 28565 | Saccharothrix espanaensis DSM 44229 complete genome | 7e-44 | 186 | BLASTN svg | BLASTP svg |
| NC_009142:2480608* | 2480608 | 2522189 | 41582 | Saccharopolyspora erythraea NRRL 2338, complete genome | 6e-29 | 137 | BLASTN svg | BLASTP svg |
| NC_018524:2246225* | 2246225 | 2281185 | 34961 | Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome | 5e-23 | 117 | BLASTN svg | BLASTP svg |
| NC_013855:56344 | 56344 | 74599 | 18256 | Azospirillum sp. B510 plasmid pAB510a, complete sequence | 8e-19 | 103 | BLASTN svg | BLASTP svg |
| NC_013854:1277106* | 1277106 | 1296099 | 18994 | Azospirillum sp. B510, complete genome | 8e-19 | 103 | BLASTN svg | BLASTP svg |
| NC_009142:5647737* | 5647737 | 5674599 | 26863 | Saccharopolyspora erythraea NRRL 2338, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
| NC_013757:780835 | 780835 | 813635 | 32801 | Geodermatophilus obscurus DSM 43160, complete genome | 1e-17 | 99.6 | BLASTN svg | BLASTP svg |
| NC_021177:2185898 | 2185898 | 2206481 | 20584 | Streptomyces fulvissimus DSM 40593, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
| NC_008268:7180663 | 7180663 | 7221881 | 41219 | Rhodococcus sp. RHA1, complete genome | 3e-15 | 91.7 | BLASTN svg | BLASTP svg |
| NC_013510:1849751* | 1849751 | 1872482 | 22732 | Thermomonospora curvata DSM 43183, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
| NC_012522:7837071 | 7837071 | 7859641 | 22571 | Rhodococcus opacus B4, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
| NC_006361:5146000* | 5146000 | 5173599 | 27600 | Nocardia farcinica IFM 10152, complete genome | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
| NC_008269:428898 | 428898 | 452599 | 23702 | Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
| NC_015312:6717973 | 6717973 | 6737638 | 19666 | Pseudonocardia dioxanivorans CB1190 chromosome, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
| NC_012522:98567 | 98567 | 122099 | 23533 | Rhodococcus opacus B4, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
| NC_010424:531727* | 531727 | 554099 | 22373 | Candidatus Desulforudis audaxviator MP104C, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_013131:2517861* | 2517861 | 2536986 | 19126 | Catenulispora acidiphila DSM 44928, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_013510:2782240* | 2782240 | 2805262 | 23023 | Thermomonospora curvata DSM 43183, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_015957:8569721 | 8569721 | 8592853 | 23133 | Streptomyces violaceusniger Tu 4113 chromosome, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_012522:3867167* | 3867167 | 3897361 | 30195 | Rhodococcus opacus B4, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_003901:3591500 | 3591500 | 3610099 | 18600 | Methanosarcina mazei Go1, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_015953:2059083 | 2059083 | 2081408 | 22326 | Streptomyces sp. SirexAA-E chromosome, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
| NC_014973:3452100 | 3452100 | 3491259 | 39160 | Geobacter sp. M18 chromosome, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
| NC_009778:1717458 | 1717458 | 1759143 | 41686 | Enterobacter sakazakii ATCC BAA-894, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
| NC_002655:1103991 | 1103991 | 1127823 | 23833 | Escherichia coli O157:H7 EDL933, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
| NC_009439:4404942* | 4404942 | 4429883 | 24942 | Pseudomonas mendocina ymp, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_015434:2375439 | 2375439 | 2398599 | 23161 | Verrucosispora maris AB-18-032 chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_013223:1188500 | 1188500 | 1215912 | 27413 | Desulfohalobium retbaense DSM 5692, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_009921:5202607* | 5202607 | 5244099 | 41493 | Frankia sp. EAN1pec, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_007651:72952* | 72952 | 145741 | 72790 | Burkholderia thailandensis E264 chromosome I, complete sequence | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_006361:3132000 | 3132000 | 3161451 | 29452 | Nocardia farcinica IFM 10152, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_012490:4425456 | 4425456 | 4444484 | 19029 | Rhodococcus erythropolis PR4, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
| NC_009921:3854969 | 3854969 | 3891481 | 36513 | Frankia sp. EAN1pec, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
| NC_009921:3419978 | 3419978 | 3445616 | 25639 | Frankia sp. EAN1pec, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |