Query: NC_007952:1934249 Burkholderia xenovorans LB400 chromosome 2, complete sequence
Start: 1934249, End: 1958014, Length: 23766
Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria
General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_009076:3179662* | 3179662 | 3218107 | 38446 | Burkholderia pseudomallei 1106a chromosome I, complete sequence | 8e-53 | 216 | BLASTN svg | BLASTP svg |
NC_008060:341851 | 341851 | 364099 | 22249 | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence | 8e-53 | 216 | BLASTN svg | BLASTP svg |
NC_007434:3588081* | 3588081 | 3626528 | 38448 | Burkholderia pseudomallei 1710b chromosome I, complete sequence | 8e-53 | 216 | BLASTN svg | BLASTP svg |
NC_006350:3329477* | 3329477 | 3367923 | 38447 | Burkholderia pseudomallei K96243 chromosome 1, complete sequence | 8e-53 | 216 | BLASTN svg | BLASTP svg |
NC_009074:3163362* | 3163362 | 3201810 | 38449 | Burkholderia pseudomallei 668 chromosome I, complete sequence | 2e-50 | 208 | BLASTN svg | BLASTP svg |
NC_006348:2372945* | 2372945 | 2411390 | 38446 | Burkholderia mallei ATCC 23344 chromosome 1, complete sequence | 5e-48 | 200 | BLASTN svg | BLASTP svg |
NC_008785:516500 | 516500 | 551727 | 35228 | Burkholderia mallei SAVP1 chromosome II, complete sequence | 5e-48 | 200 | BLASTN svg | BLASTP svg |
NC_008836:1072721* | 1072721 | 1111166 | 38446 | Burkholderia mallei NCTC 10229 chromosome II, complete sequence | 5e-48 | 200 | BLASTN svg | BLASTP svg |
NC_009080:2123987* | 2123987 | 2162432 | 38446 | Burkholderia mallei NCTC 10247 chromosome II, complete sequence | 5e-48 | 200 | BLASTN svg | BLASTP svg |
NC_007511:2072838 | 2072838 | 2099719 | 26882 | Burkholderia sp. 383 chromosome 2, complete sequence | 6e-29 | 137 | BLASTN svg | BLASTP svg |
NC_016002:2652500 | 2652500 | 2671170 | 18671 | Pseudogulbenkiania sp. NH8B, complete genome | 6e-29 | 137 | BLASTN svg | BLASTP svg |
NC_008313:2142397 | 2142397 | 2166337 | 23941 | Ralstonia eutropha H16 chromosome 1, complete sequence | 2e-22 | 115 | BLASTN svg | BLASTP svg |
NC_007973:1889076 | 1889076 | 1911099 | 22024 | Ralstonia metallidurans CH34 chromosome 1, complete sequence | 3e-21 | 111 | BLASTN svg | BLASTP svg |
NC_005085:24623 | 24623 | 49127 | 24505 | Chromobacterium violaceum ATCC 12472, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
NC_020209:4643901 | 4643901 | 4667113 | 23213 | Pseudomonas poae RE*1-1-14, complete genome | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_006349:400807 | 400807 | 420012 | 19206 | Burkholderia mallei ATCC 23344 chromosome 2, complete sequence | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_008835:1827905 | 1827905 | 1850161 | 22257 | Burkholderia mallei NCTC 10229 chromosome I, complete sequence | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_009079:402891 | 402891 | 422204 | 19314 | Burkholderia mallei NCTC 10247 chromosome I, complete sequence | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_007005:5882205 | 5882205 | 5921003 | 38799 | Pseudomonas syringae pv. syringae B728a, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_010805:2432167 | 2432167 | 2457654 | 25488 | Burkholderia multivorans ATCC 17616 chromosome 2, complete | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_010086:20876 | 20876 | 46276 | 25401 | Burkholderia multivorans ATCC 17616 chromosome 2, complete | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_008752:3684739 | 3684739 | 3718249 | 33511 | Acidovorax avenae subsp. citrulli AAC00-1, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_005773:1675793 | 1675793 | 1698612 | 22820 | Pseudomonas syringae pv. phaseolicola 1448A, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_010625:670482 | 670482 | 700999 | 30518 | Burkholderia phymatum STM815 plasmid pBPHY01, complete sequence | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_015875:34270 | 34270 | 53512 | 19243 | Streptococcus pseudopneumoniae IS7493 chromosome, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_002947:4604582 | 4604582 | 4628676 | 24095 | Pseudomonas putida KT2440, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_015740:2614317 | 2614317 | 2650049 | 35733 | Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_015138:2110149 | 2110149 | 2134842 | 24694 | Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_005773:5734733 | 5734733 | 5761099 | 26367 | Pseudomonas syringae pv. phaseolicola 1448A, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_003911:1078949* | 1078949 | 1112879 | 33931 | Silicibacter pomeroyi DSS-3, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_008782:2568027* | 2568027 | 2623514 | 55488 | Acidovorax sp. JS42, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_011083:338910 | 338910 | 362999 | 24090 | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_006905:326517 | 326517 | 351599 | 25083 | Salmonella enterica subsp. enterica serovar Choleraesuis str | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_003198:331314 | 331314 | 357099 | 25786 | Salmonella enterica subsp. enterica serovar Typhi str. CT18, | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_015379:6714545 | 6714545 | 6742160 | 27616 | Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_013961:3083816 | 3083816 | 3106099 | 22284 | Erwinia amylovora, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_007508:2756945 | 2756945 | 2779317 | 22373 | Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_010515:1124298 | 1124298 | 1152929 | 28632 | Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |