Some Help

Query: NC_007952:1934249 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 1934249, End: 1958014, Length: 23766

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009076:3179662*3179662321810738446Burkholderia pseudomallei 1106a chromosome I, complete sequence8e-53216BLASTN svgBLASTP svg
NC_008060:34185134185136409922249Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence8e-53216BLASTN svgBLASTP svg
NC_007434:3588081*3588081362652838448Burkholderia pseudomallei 1710b chromosome I, complete sequence8e-53216BLASTN svgBLASTP svg
NC_006350:3329477*3329477336792338447Burkholderia pseudomallei K96243 chromosome 1, complete sequence8e-53216BLASTN svgBLASTP svg
NC_009074:3163362*3163362320181038449Burkholderia pseudomallei 668 chromosome I, complete sequence2e-50208BLASTN svgBLASTP svg
NC_006348:2372945*2372945241139038446Burkholderia mallei ATCC 23344 chromosome 1, complete sequence5e-48200BLASTN svgBLASTP svg
NC_008785:51650051650055172735228Burkholderia mallei SAVP1 chromosome II, complete sequence5e-48200BLASTN svgBLASTP svg
NC_008836:1072721*1072721111116638446Burkholderia mallei NCTC 10229 chromosome II, complete sequence5e-48200BLASTN svgBLASTP svg
NC_009080:2123987*2123987216243238446Burkholderia mallei NCTC 10247 chromosome II, complete sequence5e-48200BLASTN svgBLASTP svg
NC_007511:20728382072838209971926882Burkholderia sp. 383 chromosome 2, complete sequence6e-29137BLASTN svgBLASTP svg
NC_016002:26525002652500267117018671Pseudogulbenkiania sp. NH8B, complete genome6e-29137BLASTN svgBLASTP svg
NC_008313:21423972142397216633723941Ralstonia eutropha H16 chromosome 1, complete sequence2e-22115BLASTN svgBLASTP svg
NC_007973:18890761889076191109922024Ralstonia metallidurans CH34 chromosome 1, complete sequence3e-21111BLASTN svgBLASTP svg
NC_005085:24623246234912724505Chromobacterium violaceum ATCC 12472, complete genome3e-21111BLASTN svgBLASTP svg
NC_020209:46439014643901466711323213Pseudomonas poae RE*1-1-14, complete genome1e-20109BLASTN svgBLASTP svg
NC_006349:40080740080742001219206Burkholderia mallei ATCC 23344 chromosome 2, complete sequence5e-1797.6BLASTN svgBLASTP svg
NC_008835:18279051827905185016122257Burkholderia mallei NCTC 10229 chromosome I, complete sequence5e-1797.6BLASTN svgBLASTP svg
NC_009079:40289140289142220419314Burkholderia mallei NCTC 10247 chromosome I, complete sequence5e-1797.6BLASTN svgBLASTP svg
NC_007005:58822055882205592100338799Pseudomonas syringae pv. syringae B728a, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_010805:24321672432167245765425488Burkholderia multivorans ATCC 17616 chromosome 2, complete1e-1489.7BLASTN svgBLASTP svg
NC_010086:20876208764627625401Burkholderia multivorans ATCC 17616 chromosome 2, complete1e-1489.7BLASTN svgBLASTP svg
NC_008752:36847393684739371824933511Acidovorax avenae subsp. citrulli AAC00-1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_005773:16757931675793169861222820Pseudomonas syringae pv. phaseolicola 1448A, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010625:67048267048270099930518Burkholderia phymatum STM815 plasmid pBPHY01, complete sequence1e-1179.8BLASTN svgBLASTP svg
NC_015875:34270342705351219243Streptococcus pseudopneumoniae IS7493 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_002947:46045824604582462867624095Pseudomonas putida KT2440, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_015740:26143172614317265004935733Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete7e-1073.8BLASTN svgBLASTP svg
NC_015138:21101492110149213484224694Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete3e-0971.9BLASTN svgBLASTP svg
NC_005773:57347335734733576109926367Pseudomonas syringae pv. phaseolicola 1448A, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_003911:1078949*1078949111287933931Silicibacter pomeroyi DSS-3, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008782:2568027*2568027262351455488Acidovorax sp. JS42, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011083:33891033891036299924090Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,5e-0867.9BLASTN svgBLASTP svg
NC_006905:32651732651735159925083Salmonella enterica subsp. enterica serovar Choleraesuis str5e-0867.9BLASTN svgBLASTP svg
NC_003198:33131433131435709925786Salmonella enterica subsp. enterica serovar Typhi str. CT18,5e-0867.9BLASTN svgBLASTP svg
NC_015379:67145456714545674216027616Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,2e-0765.9BLASTN svgBLASTP svg
NC_013961:30838163083816310609922284Erwinia amylovora, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007508:27569452756945277931722373Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010515:11242981124298115292928632Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence3e-0661.9BLASTN svgBLASTP svg