Pre_GI: BLASTN Hits

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Query: NC_007333:1743890 Thermobifida fusca YX, complete genome

Start: 1743890, End: 1873648, Length: 129759

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_018524:46567864656786467595719172Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome0981BLASTN svgBLASTP svg
NC_014210:15884261588426161009921674Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,5e-104389BLASTN svgBLASTP svg
NC_009142:40463764046376406758021205Saccharopolyspora erythraea NRRL 2338, complete genome2e-51214BLASTN svgBLASTP svg
NC_010407:151599*15159917558923991Clavibacter michiganensis subsp. sepedonicus chromosome, complete1e-43188BLASTN svgBLASTP svg
NC_015145:923979239712169429298Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome2e-42184BLASTN svgBLASTP svg
NC_007777:11704061170406118994019535Frankia sp. CcI3, complete genome1e-39174BLASTN svgBLASTP svg
NC_013131:44220004422000445003328034Catenulispora acidiphila DSM 44928, complete genome4e-37167BLASTN svgBLASTP svg
NC_009921:49485004948500497677728278Frankia sp. EAN1pec, complete genome4e-37167BLASTN svgBLASTP svg
NC_013510:3117837*3117837315092333087Thermomonospora curvata DSM 43183, complete genome9e-35159BLASTN svgBLASTP svg
NC_012803:2195808*2195808224976153954Micrococcus luteus NCTC 2665, complete genome2e-29141BLASTN svgBLASTP svg
NC_014151:40213944021394406852347130Cellulomonas flavigena DSM 20109 chromosome, complete genome3e-28137BLASTN svgBLASTP svg
NC_014815:56030005603000562327720278Micromonospora sp. L5 chromosome, complete genome1e-27135BLASTN svgBLASTP svg
NC_014391:35968123596812361791421103Micromonospora aurantiaca ATCC 27029 chromosome, complete genome1e-27135BLASTN svgBLASTP svg
NC_019673:1988853*1988853204493756085Saccharothrix espanaensis DSM 44229 complete genome5e-24123BLASTN svgBLASTP svg
NC_003888:7561923*7561923764778785865Streptomyces coelicolor A3(2), complete genome1e-21115BLASTN svgBLASTP svg
NC_006361:45745364574536459345018915Nocardia farcinica IFM 10152, complete genome5e-21113BLASTN svgBLASTP svg
NC_014210:25970002597000263744640447Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,7e-20109BLASTN svgBLASTP svg
NC_012669:14937741493774151546921696Beutenbergia cavernae DSM 12333, complete genome7e-20109BLASTN svgBLASTP svg
NC_018524:48481544848154489839850245Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome1e-18105BLASTN svgBLASTP svg
NC_015434:35070593507059353432627268Verrucosispora maris AB-18-032 chromosome, complete genome4e-18103BLASTN svgBLASTP svg
NC_014318:63953926395392646309967708Amycolatopsis mediterranei U32 chromosome, complete genome3e-1697.6BLASTN svgBLASTP svg
NC_012522:58476995847699587179324095Rhodococcus opacus B4, complete genome1e-1595.6BLASTN svgBLASTP svg
NC_013172:46630046630048885722558Brachybacterium faecium DSM 4810, complete genome3e-1387.7BLASTN svgBLASTP svg
NC_013757:3100515*3100515312110420590Geodermatophilus obscurus DSM 43160, complete genome2e-1181.8BLASTN svgBLASTP svg
NC_015656:132633*13263316991437282Frankia symbiont of Datisca glomerata chromosome, complete genome7e-1179.8BLASTN svgBLASTP svg
NC_007333:16774061677406169967722272Thermobifida fusca YX, complete genome1e-0975.8BLASTN svgBLASTP svg
NC_003155:36550036550038509919600Streptomyces avermitilis MA-4680, complete genome4e-0973.8BLASTN svgBLASTP svg
NC_011886:17703917703920120524167Arthrobacter chlorophenolicus A6, complete genome4e-0973.8BLASTN svgBLASTP svg
NC_021064:1789980*1789980181232622347Propionibacterium avidum 44067, complete genome4e-0973.8BLASTN svgBLASTP svg
NC_013959:839928399210878124790Sideroxydans lithotrophicus ES-1 chromosome, complete genome2e-0871.9BLASTN svgBLASTP svg
NC_008269:86800086800091059942600Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence2e-0871.9BLASTN svgBLASTP svg
NC_014623:47402214740221476959929379Stigmatella aurantiaca DW4/3-1 chromosome, complete genome6e-0869.9BLASTN svgBLASTP svg
NC_018524:2246225*2246225228118534961Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome2e-0767.9BLASTN svgBLASTP svg
NC_015572:45767784576778460783531058Methylomonas methanica MC09 chromosome, complete genome2e-0767.9BLASTN svgBLASTP svg
NC_010617:55493554937369118199Kocuria rhizophila DC2201, complete genome2e-0767.9BLASTN svgBLASTP svg
NC_020302:14680714680717014223336Corynebacterium halotolerans YIM 70093 = DSM 44683, complete1e-0665.9BLASTN svgBLASTP svg
NC_018524:45998094599809463651236704Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome1e-0665.9BLASTN svgBLASTP svg
NC_018524:301992*30199232409922108Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome1e-0665.9BLASTN svgBLASTP svg
NC_013159:50292850292853082127894Saccharomonospora viridis DSM 43017, complete genome1e-0665.9BLASTN svgBLASTP svg
NC_018524:45644934564493458409919607Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome4e-0663.9BLASTN svgBLASTP svg
NC_009480:996409964013380134162Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete4e-0663.9BLASTN svgBLASTP svg