Pre_GI: BLASTN Hits

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Query: NC_007333:1411050 Thermobifida fusca YX, complete genome

Start: 1411050, End: 1435109, Length: 24060

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003888:56225562259004333819Streptomyces coelicolor A3(2), complete genome7e-38167BLASTN svgBLASTP svg
NC_019673:1988853*1988853204493756085Saccharothrix espanaensis DSM 44229 complete genome3e-1591.7BLASTN svgBLASTP svg
NC_013947:4695000*4695000472086325864Stackebrandtia nassauensis DSM 44728 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_014391:2579919*2579919261467434756Micromonospora aurantiaca ATCC 27029 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013446:26559552655955268195826004Comamonas testosteroni CNB-2, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010617:19103881910388192887618489Kocuria rhizophila DC2201, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013757:3100515*3100515312110420590Geodermatophilus obscurus DSM 43160, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014215:1243125*1243125126864225518Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,5e-1177.8BLASTN svgBLASTP svg
NC_011992:19682581968258199851030253Acidovorax ebreus TPSY, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013093:2230171*2230171225498024810Actinosynnema mirum DSM 43827, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014814:43265004326500435109924600Mycobacterium sp. Spyr1 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011886:17703917703920120524167Arthrobacter chlorophenolicus A6, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_012808:157156*15715618609928944Methylobacterium extorquens AM1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008269:86800086800091059942600Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_012803:15191381519138153782318686Micrococcus luteus NCTC 2665, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020133:24219652421965244809926135Mycobacterium liflandii 128FXT, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009921:49036884903688492656422877Frankia sp. EAN1pec, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007777:4892150*4892150493295540806Frankia sp. CcI3, complete genome7e-0763.9BLASTN svgBLASTP svg