Query: NC_007333:1411050 Thermobifida fusca YX, complete genome
Start: 1411050, End: 1435109, Length: 24060
Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
| Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
|---|
| NC_003888:56225 | 56225 | 90043 | 33819 | Streptomyces coelicolor A3(2), complete genome | 7e-38 | 167 | BLASTN svg | BLASTP svg |
| NC_019673:1988853* | 1988853 | 2044937 | 56085 | Saccharothrix espanaensis DSM 44229 complete genome | 3e-15 | 91.7 | BLASTN svg | BLASTP svg |
| NC_013947:4695000* | 4695000 | 4720863 | 25864 | Stackebrandtia nassauensis DSM 44728 chromosome, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
| NC_014391:2579919* | 2579919 | 2614674 | 34756 | Micromonospora aurantiaca ATCC 27029 chromosome, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
| NC_013446:2655955 | 2655955 | 2681958 | 26004 | Comamonas testosteroni CNB-2, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
| NC_010617:1910388 | 1910388 | 1928876 | 18489 | Kocuria rhizophila DC2201, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
| NC_013757:3100515* | 3100515 | 3121104 | 20590 | Geodermatophilus obscurus DSM 43160, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
| NC_014215:1243125* | 1243125 | 1268642 | 25518 | Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
| NC_011992:1968258 | 1968258 | 1998510 | 30253 | Acidovorax ebreus TPSY, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
| NC_013093:2230171* | 2230171 | 2254980 | 24810 | Actinosynnema mirum DSM 43827, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
| NC_014814:4326500 | 4326500 | 4351099 | 24600 | Mycobacterium sp. Spyr1 chromosome, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_011886:177039 | 177039 | 201205 | 24167 | Arthrobacter chlorophenolicus A6, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_012808:157156* | 157156 | 186099 | 28944 | Methylobacterium extorquens AM1, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_008269:868000 | 868000 | 910599 | 42600 | Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_012803:1519138 | 1519138 | 1537823 | 18686 | Micrococcus luteus NCTC 2665, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_020133:2421965 | 2421965 | 2448099 | 26135 | Mycobacterium liflandii 128FXT, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_009921:4903688 | 4903688 | 4926564 | 22877 | Frankia sp. EAN1pec, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_007777:4892150* | 4892150 | 4932955 | 40806 | Frankia sp. CcI3, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |