Pre_GI: BLASTN Hits

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Query: NC_007333:1129826 Thermobifida fusca YX, complete genome

Start: 1129826, End: 1159117, Length: 29292

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014210:38179483817948384029722350Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,8e-115422BLASTN svgBLASTP svg
NC_007333:810381*81038185466244282Thermobifida fusca YX, complete genome7e-94353BLASTN svgBLASTP svg
NC_015953:18609461860946187926918324Streptomyces sp. SirexAA-E chromosome, complete genome1e-70276BLASTN svgBLASTP svg
NC_021177:20347222034722205851023789Streptomyces fulvissimus DSM 40593, complete genome7e-66260BLASTN svgBLASTP svg
NC_019673:77976667797666782158623921Saccharothrix espanaensis DSM 44229 complete genome7e-66260BLASTN svgBLASTP svg
NC_009142:5698100*5698100573806239963Saccharopolyspora erythraea NRRL 2338, complete genome8e-32147BLASTN svgBLASTP svg
NC_020126:97955349795534981821822685Myxococcus stipitatus DSM 14675, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_014666:6940532*6940532696752226991Frankia sp. EuI1c chromosome, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_013093:1213908*1213908124337529468Actinosynnema mirum DSM 43827, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_010572:18728401872840190085328014Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013159:50292850292853082127894Saccharomonospora viridis DSM 43017, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_003888:73374537337453737640338951Streptomyces coelicolor A3(2), complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014168:28203152820315284681226498Segniliparus rotundus DSM 44985 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_018750:21189072118907214335524449Streptomyces venezuelae ATCC 10712, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006361:36153223615322363714921828Nocardia farcinica IFM 10152, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_015859:18986931898693192889630204Corynebacterium variabile DSM 44702 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014158:15663101566310158807221763Tsukamurella paurometabola DSM 20162 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008595:22528302252830227372020891Mycobacterium avium 104, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003888:5790104*5790104582064330540Streptomyces coelicolor A3(2), complete genome3e-0661.9BLASTN svgBLASTP svg