Pre_GI: BLASTN Hits

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Query: NC_005140:960261 Vibrio vulnificus YJ016 chromosome II, complete sequence

Start: 960261, End: 981507, Length: 21247

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013457:1703201*1703201172926026060Vibrio sp. Ex25 chromosome 2, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_015633:46114346114348763326491Vibrio anguillarum 775 chromosome chromosome I, complete sequence7e-1073.8BLASTN svgBLASTP svg
NC_013421:4714478*4714478478002665549Pectobacterium wasabiae WPP163, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_006370:84720484720486812520922Photobacterium profundum SS9 chromosome 1, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_004460:12371291237129126309925971Vibrio vulnificus CMCP6 chromosome II, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_012660:4558122*4558122459234134220Pseudomonas fluorescens SBW25 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_005140:44435344435346518620834Vibrio vulnificus YJ016 chromosome II, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_004460:17180881718088173988521798Vibrio vulnificus CMCP6 chromosome II, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_005140:18209701820970184413723168Vibrio vulnificus YJ016 chromosome II, complete sequence6e-0763.9BLASTN svgBLASTP svg
NC_010506:51559515155951517924523295Shewanella woodyi ATCC 51908, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008750:23320002332000235419622197Shewanella sp. W3-18-1, complete genome2e-0661.9BLASTN svgBLASTP svg