Query: NC_004603:1961432 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete
Start: 1961432, End: 1984650, Length: 23219
Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria
General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_021066:2226826* | 2226826 | 2254226 | 27401 | Raoultella ornithinolytica B6, complete genome | 6e-29 | 137 | BLASTN svg | BLASTP svg |
NC_014121:2745097* | 2745097 | 2768220 | 23124 | Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete | 1e-26 | 129 | BLASTN svg | BLASTP svg |
NC_013508:2356865* | 2356865 | 2388599 | 31735 | Edwardsiella tarda EIB202, complete genome | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_012779:2424967* | 2424967 | 2449599 | 24633 | Edwardsiella ictaluri 93-146, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_003909:4333097* | 4333097 | 4356521 | 23425 | Bacillus cereus ATCC 10987, complete genome | 5e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_011772:4487378* | 4487378 | 4522322 | 34945 | Bacillus cereus G9842, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_020209:2119845* | 2119845 | 2144574 | 24730 | Pseudomonas poae RE*1-1-14, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_007645:2294553* | 2294553 | 2333102 | 38550 | Hahella chejuensis KCTC 2396, complete genome | 7e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_007005:1036243 | 1036243 | 1063639 | 27397 | Pseudomonas syringae pv. syringae B728a, complete genome | 7e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_014500:2934232* | 2934232 | 2957172 | 22941 | Dickeya dadantii 3937 chromosome, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_004722:4496000* | 4496000 | 4518360 | 22361 | Bacillus cereus ATCC 14579, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_005773:3851433 | 3851433 | 3869278 | 17846 | Pseudomonas syringae pv. phaseolicola 1448A, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_008700:3514745 | 3514745 | 3540086 | 25342 | Shewanella amazonensis SB2B, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_012912:242709 | 242709 | 271487 | 28779 | Dickeya zeae Ech1591, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_007481:3167434* | 3167434 | 3192952 | 25519 | Pseudoalteromonas haloplanktis TAC125 chromosome I, complete | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_012968:1108687* | 1108687 | 1139568 | 30882 | Methylotenera mobilis JLW8, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_007912:2930063 | 2930063 | 2948347 | 18285 | Saccharophagus degradans 2-40, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_006274:4408734* | 4408734 | 4427235 | 18502 | Bacillus cereus E33L, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_007005:4062311 | 4062311 | 4083472 | 21162 | Pseudomonas syringae pv. syringae B728a, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_014762:1204584 | 1204584 | 1236136 | 31553 | Sulfuricurvum kujiense DSM 16994 chromosome, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_012881:2957309* | 2957309 | 2976312 | 19004 | Desulfovibrio salexigens DSM 2638, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_010468:1029471* | 1029471 | 1054991 | 25521 | Escherichia coli ATCC 8739, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_012660:1579204* | 1579204 | 1621092 | 41889 | Pseudomonas fluorescens SBW25 chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_005140:444353 | 444353 | 465186 | 20834 | Vibrio vulnificus YJ016 chromosome II, complete sequence | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_004460:1718088 | 1718088 | 1739885 | 21798 | Vibrio vulnificus CMCP6 chromosome II, complete sequence | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |