Some Help

Query: NC_004603:1961432 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1961432, End: 1984650, Length: 23219

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_021066:2226826*2226826225422627401Raoultella ornithinolytica B6, complete genome6e-29137BLASTN svgBLASTP svg
NC_014121:2745097*2745097276822023124Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete1e-26129BLASTN svgBLASTP svg
NC_013508:2356865*2356865238859931735Edwardsiella tarda EIB202, complete genome1e-20109BLASTN svgBLASTP svg
NC_012779:2424967*2424967244959924633Edwardsiella ictaluri 93-146, complete genome3e-18101BLASTN svgBLASTP svg
NC_003909:4333097*4333097435652123425Bacillus cereus ATCC 10987, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_011772:4487378*4487378452232234945Bacillus cereus G9842, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_020209:2119845*2119845214457424730Pseudomonas poae RE*1-1-14, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007645:2294553*2294553233310238550Hahella chejuensis KCTC 2396, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_007005:10362431036243106363927397Pseudomonas syringae pv. syringae B728a, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014500:2934232*2934232295717222941Dickeya dadantii 3937 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_004722:4496000*4496000451836022361Bacillus cereus ATCC 14579, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_005773:38514333851433386927817846Pseudomonas syringae pv. phaseolicola 1448A, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_008700:35147453514745354008625342Shewanella amazonensis SB2B, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_012912:24270924270927148728779Dickeya zeae Ech1591, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007481:3167434*3167434319295225519Pseudoalteromonas haloplanktis TAC125 chromosome I, complete7e-1073.8BLASTN svgBLASTP svg
NC_012968:1108687*1108687113956830882Methylotenera mobilis JLW8, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007912:29300632930063294834718285Saccharophagus degradans 2-40, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_006274:4408734*4408734442723518502Bacillus cereus E33L, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007005:40623114062311408347221162Pseudomonas syringae pv. syringae B728a, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014762:12045841204584123613631553Sulfuricurvum kujiense DSM 16994 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_012881:2957309*2957309297631219004Desulfovibrio salexigens DSM 2638, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010468:1029471*1029471105499125521Escherichia coli ATCC 8739, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_012660:1579204*1579204162109241889Pseudomonas fluorescens SBW25 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005140:44435344435346518620834Vibrio vulnificus YJ016 chromosome II, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_004460:17180881718088173988521798Vibrio vulnificus CMCP6 chromosome II, complete sequence3e-0661.9BLASTN svgBLASTP svg