Pre_GI: BLASTP Hits

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Query: NC_017379:1233482:1243306 Helicobacter pylori Puno135 chromosome, complete genome

Start: 1243306, End: 1244049, Length: 744

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017378:1175639:118545711854571186200744Helicobacter pylori Puno120 chromosome, complete genomealpha-carbonic anhydrase2e-144511
NC_011333:1236730:124090412409041241647744Helicobacter pylori G27 chromosome, complete genomealpha-carbonic anhydrase9e-143505
NC_010730:578493:592966592966593706741Sulfurihydrogenibium sp. YO3AOP1, complete genomeCarbonate dehydratase3e-36151
NC_013851:2317091:231709123170912317846756Allochromatium vinosum DSM 180 chromosome, complete genomecarbonic anhydrase2e-35149
NC_008314:2686851:271275627127562713505750Ralstonia eutropha H16 chromosome 2, complete sequenceperiplasmic alpha-carbonic anhydrase3e-34145
NC_006448:1451729:147220214722021472984783Streptococcus thermophilus LMG 18311, complete genomecarbonate dehydratase3e-30132
NC_002570:367000:386066386066386893828Bacillus halodurans C-125, complete genomecarbonic anhydrase precursor5e-30131
NC_007508:4765751:476774547677454768572828Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomea-type carbonic anhydrase4e-28125
NC_007484:1229899:123749612374961238443948Nitrosococcus oceani ATCC 19707, complete genomeCarbonate dehydratase5e-26117
NC_010296:1271393:127360112736011274329729Microcystis aeruginosa NIES-843, complete genomecarbonic anhydrase precursor2e-24112
NC_011726:1023690:1027355102735510286651311Cyanothece sp. PCC 8801, complete genomeCarbonate dehydratase5e-2098.2
NC_013161:1023716:1027381102738110286911311Cyanothece sp. PCC 8802, complete genomecarbonic anhydrase5e-2098.2
NC_015675:6276357:632465263246526325404753Mesorhizobium opportunistum WSM2075 chromosome, complete genomecarbonic anhydrase6e-2097.8
NC_019973:5694620:569894156989415699693753Mesorhizobium australicum WSM2073, complete genomecarbonic anhydrase6e-2097.8
NC_014923:5765660:576998157699815770733753Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completecarbonic anhydrase6e-2097.8
NC_015391:1248583:126569012656901266412723Carnobacterium sp. 17-4 chromosome, complete genomehypothetical protein5e-1994.7
NC_014334:589526:589526589526590194669Lactobacillus casei str. Zhang chromosome, complete genomecarbonic anhydrase2e-1685.9