Pre_GI: BLASTP Hits

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Query: NC_017328:3935185:3950954 Shigella flexneri 2002017 chromosome, complete genome

Start: 3950954, End: 3952570, Length: 1617

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:4095016:4106927410692741084351509Shigella sonnei Ss046, complete genometransposition regulatory protein01004
NC_014844:2721746:2736356273635627379571602Desulfovibrio aespoeensis Aspo-2 chromosome, complete genometransposon Tn7 transposition regulatory protein TnsE3e-56220
NC_009052:5089963:5095833509583350974341602Shewanella baltica OS155, complete genomehypothetical protein2e-50201
NC_015851:89006:1010081010081026061599Acidithiobacillus caldus SM-1 megaplasmid, complete sequencetransposon Tn7 transposition regulatory protein TnsE5e-50199
NC_006512:2789098:2807290280729028086001311Idiomarina loihiensis L2TR, complete genomeTransposon Tn7 transposition transposition regulatory protein tnsE3e-46186
NC_015572:4916430:4928083492808349296781596Methylomonas methanica MC09 chromosome, complete genomehypothetical protein7e-45182
NC_015740:4508375:4513551451355145151731623Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein7e-2099
NC_007498:3399478:3410256341025634117311476Pelobacter carbinolicus DSM 2380, complete genometransposition regulatory protein2e-1068.2
NC_010995:4525119:4543994454399445455951602Cellvibrio japonicus Ueda107, complete genomeTn7-Cj, transposition protein TnsE4e-1066.6
NC_007645:7136956:7185208718520871868661659Hahella chejuensis KCTC 2396, complete genomehypothetical protein4e-0860.1