Pre_GI: BLASTP Hits

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Query: NC_017328:1075535:1116994 Shigella flexneri 2002017 chromosome, complete genome

Start: 1116994, End: 1117653, Length: 660

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:4055117:406728340672834067942660Salmonella enterica subsp. enterica serovar Typhimurium strchloramphenicol acetyltransferase1e-130465
NC_013365:92973:119115119115119774660Escherichia coli O111:H- str. 11128 plasmid pO111_1, completechloramphenicol acetyltransferase1e-130465
NC_011586:268927:297189297189297848660Acinetobacter baumannii AB0057 chromosome, complete genomechloramphenicol acetyltransferase1e-130465
NC_010410:3606826:363735436373543638013660Acinetobacter baumannii AYE, complete genomeChloramphenicol acetyltransferase (CAT)1e-130465
NC_009436:1679265:168629916862991686976678Enterobacter sp. 638, complete genomechloramphenicol acetyltransferase1e-78292
NC_011092:76993:821998219982840642Salmonella enterica subsp. enterica serovar Schwarzengrund strchloramphenicol acetyltransferase 21e-55215
NC_009349:78000:780487804810171623669Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete6e-53207
NC_009349:78000:946439464395269627Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completechloramphenicol acetyltransferase8e-50196
NC_011749:34056:475024750247777276Escherichia coli UMN026 plasmid p1ESCUM, complete sequence5e-45180
NC_014376:2921769:293156329315632932195633Clostridium saccharolyticum WM1 chromosome, complete genomeChloramphenicol O-acetyltransferase4e-43174
NC_013316:4095905:410887841088784109522645Clostridium difficile R20291, complete genomechloramphenicol o-acetyltransferase2e-35149
NC_013315:4015119:402809240280924028736645Clostridium difficile CD196 chromosome, complete genomechloramphenicol o-acetyltransferase2e-35149
NC_017179:4023139:403611840361184036756639Clostridium difficile BI1, complete genomechloramphenicol o-acetyltransferase2e-35148
NC_016048:3063888:308744830874483088104657Oscillibacter valericigenes Sjm18-20, complete genomeputative chloramphenicol acetyltransferase2e-29129
NC_015687:250768:266319266319266957639Clostridium acetobutylicum DSM 1731 chromosome, complete genomechloramphenicol acetyltransferase2e-22105
NC_003030:249648:266321266321266959639Clostridium acetobutylicum ATCC 824, complete genomeChloramphenicol acetyltransferase2e-22105
NC_014376:3064787:308570430857043086342639Clostridium saccharolyticum WM1 chromosome, complete genomechloramphenicol acetyltransferase7e-21100
NC_016940:190986:207964207964208584621Saprospira grandis str. Lewin chromosome, complete genomechloramphenicol acetyltransferase2e-1892.4
NC_010655:373437:390524390524391159636Akkermansia muciniphila ATCC BAA-835, complete genomechloramphenicol acetyltransferase2e-1479.3
NC_009615:3993187:401522240152224015845624Parabacteroides distasonis ATCC 8503 chromosome, complete genomechloramphenicol acetyltransferase4e-1478.2