Pre_GI: BLASTP Hits

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Query: NC_017179:281069:300586 Clostridium difficile BI1, complete genome

Start: 300586, End: 301014, Length: 429

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017294:403422:406150406150406584435Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomehypothetical protein2e-21100
NC_019970:35985:760447604476487444Thermoanaerobacterium thermosaccharolyticum M0795, complete genomehypothetical protein2e-0960.8
NC_011567:2556915:256184525618452562291447Anoxybacillus flavithermus WK1, complete genomehypothetical protein3e-0960.5
NC_014410:51711:895918959190034444Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,protein of unknown function DUF3273e-0960.5
NC_006510:3133965:316006431600643160501438Geobacillus kaustophilus HTA426, complete genomehypothetical protein1e-0858.5
NC_014915:3259440:328592632859263286363438Geobacillus sp. Y412MC52 chromosome, complete genomeprotein of unknown function DUF3271e-0858.5
NC_015555:49842:893668936689809444Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeprotein of unknown function DUF3275e-0856.2
NC_015275:1:199221992220368447Clostridium lentocellum DSM 5427 chromosome, complete genomeprotein of unknown function DUF3279e-0855.5
NC_012793:3035978:304828730482873048724438Geobacillus sp. WCH70, complete genomeprotein of unknown function DUF3272e-0754.7
NC_008346:36176:528985289853347450Syntrophomonas wolfei subsp. wolfei str. Goettingen, completehypothetical protein4e-0753.5
NC_012778:2997:244082440824848441Eubacterium eligens ATCC 27750, complete genomehypothetical protein5e-0753.1
NC_015732:30472:439314393144446516Spirochaeta caldaria DSM 7334 chromosome, complete genomehypothetical protein9e-0752.4
NC_004193:35698:398983989840329432Oceanobacillus iheyensis HTE831, complete genomehypothetical protein1e-0652
NC_010003:2134878:215300921530092153479471Petrotoga mobilis SJ95, complete genomeprotein of unknown function DUF3273e-0650.4
NC_014614:2434017:243675924367592437226468Clostridium sticklandii, complete genomehypothetical protein4e-0650.1
NC_013791:2839516:285590928559092856346438Bacillus pseudofirmus OF4 chromosome, complete genomehypothetical protein5e-0650.1